RNA id: XM_036934194.1


Basic Information

Item Value
RNA id XM_036934194.1
length 3712
RNA type mRNA
GC content 0.53
exon number 13
gene id LOC118936819
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 81617460 ~ 81672338 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaccgcGCCGCCGCCGCACTCGGTCTTCTGCGTCGTGAACGAGCACGTAGAAACGACGTTGACGTGAGGCTTCAAGATGGCGGAAGCCTTGACGAGTCAGGAGGAACTGGCGGTGGAGGAGTTCCTGAGTGAGGTGCGTAGCAGGGAACATCCCCACAGTGCTGCTCTGGTCTCTCAGCCGACCGCCGTCAAGTTCCTCATGGCGCGCAAGTTTGATGTCTCCCGAGCAATAGACCTCTTCCAGGCATACAAGAACACGAGGATTAAGGAGGGCATCTTCAACATTAACCCAGAAGAGGAACCTCTCCGTTCTGAACTGCTCAGCGGAAAGTTCACCGTCCTGCCTGGTCGTGATGCTAAGGGTGCTGCTCTGGCTCTGTTCACCGCTCGTCTCCACCGCTCTGACGTCACTACCCATAGGGCTGTGCTGCAGGCCATCATCTTTCAGCTGGACAAAGCCATCGAGAGtgTTGACACCCAGAGAGATGGTTTAATATTCATCTATGACATGACCAACTCCAGCTATGGGAACTTTGACTATGAGCTCTGTGTCAAGATCCTCGACCTCCTCAAGGGTGCGTTCCCAGCTCGTCTGAAGTGTGTGTTCATCGTGTCTTCTCCTCTCTGGTTCAGAGCTCCCTTCGCCGTCCTCAGACTCTTCGTACGTGagaagctgagagagagggTGTGTACAGTGAAGGCCCACGAGCTGTCCAATTACATCCCAGTCTCTTCTCTTCCGGAACACCTGAACGGAACCTCCCGGTACAGCCACGTTGCCTGGATACAGTCCTGCGTCAACACACACACCGCCCCAGGCGACGCGAGCACACACCCGCACGACACACACGACTGCGTGGGCAGCCTGTTGCTCTCGTACAGCCTGGAGCCTCACAACGCTAACGCCGCCGCTACGTTAGCCGCTACGCAAACCTCCATAGACTCCCACTCAGATTTGCCGCTGCTGTTAGCCTCCGAGCTAGCGTTAGCTGCTACGGCTAACTCCAACTGCTACGACGACAGTAATGCTAACCCACACGTCCACTGTGACACAGTGAACGGCAGGACTCGAGGCCGGGCCCAGAACAGCCCCCAGAGCTCTGGACTACAGAGGAATCACCAACATTGGAACGGTTCTGCCCGTAACTACGGGGTCAAGGCAGGGTTGGGGGTTAATAACGTTGTTGGGGTTGTTAGCGGCGCTAGCCCCAATGCTAACAGCGTGAATGGTCGCCAGCCCCCTCCCCAGTCGGACACGCCCCCGGacacacccctccaccacaaAGTAGTAGGAATTACGATGAGTGTCGGGTCAGAAACCCTCGACGACGGAACAGCGAACAAGGAAGAgcgggaaggagaggaggaagaggatgaggtaGATGGGGTGCCTCCTCTCCCTCAGAAGTCTCTCCCACGCCACCCTCAACCCCCGCCGTCACTCTGCGGCGCGTCACAGCCGGACGAGGACCCTTGTCCCCGGGAAGAGGTGTCCGTACACATGCCTGACGGGGTAGGGATGAACGTGTTGGAGCTGGTGGAGCAcgtgaagaagaggaagaagaaaggaATCTACCAGGAGTATGAAGAGATACGCAAGGAGCCTCCTACTGGTAGCTTTGACTACAGCaaAAAGCTGTCCAATCAGATCAAGAACAGGTACAGTGATGTCCTCTGTCTGGACCAATCACGTGTCAGACTCTGCCAGCTCTGTGACGACGAGGACGAGaCGTCAGACTACATCAATGCTAGTCTTATGGACGGCTACAAGAGGAGCAACGCTTATATCGCAACTCAGGGTCCTCTGCCGAAGACATTTGGTGATTTCTGGCGCATGGTGTGGGAGCAGATGGTGCTGATAGTTGTCATGACTACCAGggtggTAGAGCGTGGGAGAGTAAAGTGTGGTCAGTACTGGCCGAAAGAGGAGGGGACAACGGAGCAGCATGGACACTTCCTGGTTAGGAACACATCCATCCAGCTGTATCAGGACTTCAGACTGTCTCACCTGGAACTATACAAcagccagacaggtgagaggagggaggtctcccactacctgtatgtcagCTGGCCAGACTTCGGTGTGCCCAAGTGTGCGTTGGCCATGTTGGATTTCCGTGAGCACGTGCAGCAGCGGCAGGAGGCGGCGCTGAGGAGTCTGGGAGCTGAGTGGGTGGGACCCCCAGGTGGGCCACCGCTGGTCGTACACTGCAGCGCAGGTATCGGACGCACAGGTACGTTCTGTACCCTGGACATCTGTCTGTCCAGGCTGGAGGACATTGGGACGGTggatgtgtgtgagacagtgagGAGGATGAGGACCCAGAGAGCCTTCAGTATACAGACCTGGGACCAGTATTACTTCTGCTACACGGCCGTCATCGAGTACGCACAGCGACGCGGAAAACTGACCCCGGTACAGTGGTCCGATTCAGAcctagagacagacagcgagTGACGGGAATGGGATGGGTGGAGGATGGAATGAACgcaggctgagagagggagggaaacaggATATGtcccaggaagaggaagagggtggaggatggaaacaggatgtgtcccaggaagaggaagagggtggaggatggaaacaggatgtgtcccaggaagaggaagagggtggaggatggaaacaggatgtgttccaggaagaggaagagggtggaggatggaATGAACGCAGgctgagggagatggaggagggatggaaacaggatgtgtTCGAGGAAGAGCGTGTGAAAGCTAAACGACTCTTTGAGTTACTCCCCCAAATcatgaggaggagaagaagatgaGATGTATCaacgattgattgattgattgattgattaattgattgatagAGCAGTATCCTGCCATTTAGTATGTAGTGGGGCAGCTCTGAGCTAAGAGGAGCTCTCCTGGCCTGGCCTGTCCTGTTTCTCCCATAGAGCTAAGAGGAGCTGGCCTCTCCTgtcctggcctggcctggcctggcctgttTCTCCCATAGAGCTAGCTAGAGGGCTCTGCTTTGCACCTGTGCGACAATGTCTTGTGTGACAGCATGTGCTGCACCATAGAGGTCTGTCTAAGTCTATGGTCGCTCTCCCTATCCCTAGTCGTACATCCTAGTGACAATGGCCCCCTGGACTGTCACCATAGAGGTCTGTCTAAGTCTATGGTCGCTCTCCCTAGTCGTACATCCTAGTGACAATGGCCCACTGGACTGTCACCATAGAGGTCTGTCTAAGTCTATGGTCGCTCTCCCTAGTCGTACATCCTAGTGACAATGGCCCACTGGACTGTCAACCTTCTTTttgacttcttcttcttcttctgtctttTATTGGCCTTTAGTTCTATGGTGATGCATTTCCTGTTCCTGTTTTTTGACTTTTCACCCCGTTTAGGTAATGAAACCCCTCCGCAAGCCAAAGCCGCCGACTCCCTGAATGCTTGAACGTACTGATTTTATATGGAGACATGAGGAGCATTAACACCCTGTATATTCCTGTaacatacatgtatatataataataataataatgtctaATGGAGGAAGATGAAGGACGAcaacaagccttgttttaatataattctctctaaccttgggtcaataacaagccttgttttaatataattctctctaaccttggggtcaataacaagccttgttttaatataattctctctaaccttggggtcaataacaagccttgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1057579 lncRNA upstream 264 81616974 ~ 81617196 (+) True G928921
TU1057529 lncRNA upstream 781 81615652 ~ 81616679 (+) True G928881
TU1057578 lncRNA upstream 10284 81606883 ~ 81607176 (+) True G928920
TU1057577 lncRNA upstream 18408 81598564 ~ 81599052 (+) True G928919
TU1057575 lncRNA upstream 20559 81596429 ~ 81596901 (+) True G928917
TU1057570 lncRNA downstream 5490 81677828 ~ 81678433 (+) True G928913
TU1057591 lncRNA downstream 7054 81679392 ~ 81679639 (+) True G928932
TU1057609 lncRNA downstream 30205 81702543 ~ 81702826 (+) True G928947
TU1057610 lncRNA downstream 55130 81727468 ~ 81727673 (+) True G928948
TU1057595 lncRNA downstream 57759 81730097 ~ 81731678 (+) True LOC110514629
XM_036934192.1 mRNA upstream 2131 81558744 ~ 81615329 (+) False LOC118936818
XM_036934193.1 mRNA upstream 2131 81558744 ~ 81615329 (+) False LOC118936818
XM_036934189.1 mRNA upstream 82469 81526514 ~ 81534991 (+) False LOC110513527
XM_036934190.1 mRNA upstream 82469 81526514 ~ 81534991 (+) False LOC110513527
XM_036934187.1 mRNA upstream 111307 81486596 ~ 81506153 (+) False LOC110518956
XR_005034268.1 mRNA downstream 10096 81682434 ~ 81685439 (+) False LOC118936820
XR_005034266.1 mRNA downstream 10098 81682436 ~ 81685439 (+) False LOC118936820
XR_005034269.1 mRNA downstream 10098 81682436 ~ 81685439 (+) False LOC118936820
XR_005034274.1 mRNA downstream 10098 81682436 ~ 81685439 (+) False LOC118936820
XR_005034265.1 mRNA downstream 10099 81682437 ~ 81685439 (+) False LOC118936820
TU1057515 other upstream 21708 81595003 ~ 81595752 (+) False LOC118936818
TU1057514 other upstream 21723 81579385 ~ 81595737 (+) False LOC118936818
TU1057517 other upstream 21723 81595003 ~ 81595737 (+) True LOC118936818
TU1057527 other upstream 87578 81526748 ~ 81529882 (+) True LOC110513527
TU1057519 other upstream 110978 81504675 ~ 81506482 (+) True LOC110518956
TU1057598 other downstream 48895 81721233 ~ 81722841 (+) False LOC110514629
TU1057735 other downstream 275772 81948110 ~ 81961513 (+) True G929033
TU1057775 other downstream 501127 82173465 ~ 82201005 (+) False LOC118936825
TU1057776 other downstream 501127 82173465 ~ 82201005 (+) False LOC118936825
TU1057850 other downstream 507448 82179786 ~ 82180426 (+) True G929113

Expression Profile