RNA id: TU1057572


Basic Information

Item Value
RNA id TU1057572
length 322
lncRNA type sense_over
GC content 0.60
exon number 2
gene id LOC118936819
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 81617460 ~ 81672338 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTCAGAGCTCCCTTCGCCGTCCTCAGACTCTTCGTACGTGagaagctgagagagagggTGTGTACAGTGAAGGCCCACGAGCTGTCCAATTACATCCCAGTCTCTTCTCTTCCGGAACACCTGAACGGAACCTCCCGGTACAGCCACGTTGCCTGGATACAGTCCTGCGTCAACACACACACCGCCCCAGGCGACGCGAGCACACACCCGCACGACACACACGACTGCGTGGGCAGCCTGTTGCTCTCGTACAGCCTGGAGCCTCACAACGCTAACGCCGCCGCTACGTTAGCCGCTACGCAAACCTCCATAGACTCCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1057582 lncRNA upstream 16777 81636942 ~ 81639155 (+) True G928924
TU1057581 lncRNA upstream 17373 81636668 ~ 81638559 (+) True G928923
TU1057579 lncRNA upstream 38736 81616974 ~ 81617196 (+) True G928921
TU1057529 lncRNA upstream 39253 81615652 ~ 81616679 (+) True G928881
TU1057578 lncRNA upstream 48756 81606883 ~ 81607176 (+) True G928920
TU1057570 lncRNA downstream 21320 81677828 ~ 81678433 (+) True G928913
TU1057591 lncRNA downstream 22884 81679392 ~ 81679639 (+) True G928932
TU1057609 lncRNA downstream 46035 81702543 ~ 81702826 (+) True G928947
TU1057610 lncRNA downstream 70960 81727468 ~ 81727673 (+) True G928948
TU1057595 lncRNA downstream 73589 81730097 ~ 81731678 (+) True LOC110514629
XM_036934192.1 mRNA upstream 40603 81558744 ~ 81615329 (+) False LOC118936818
XM_036934193.1 mRNA upstream 40603 81558744 ~ 81615329 (+) False LOC118936818
XM_036934189.1 mRNA upstream 120941 81526514 ~ 81534991 (+) False LOC110513527
XM_036934190.1 mRNA upstream 120941 81526514 ~ 81534991 (+) False LOC110513527
XR_005034264.1 mRNA upstream 151368 81503209 ~ 81504564 (+) False LOC118936817
XR_005034268.1 mRNA downstream 25926 81682434 ~ 81685439 (+) False LOC118936820
XR_005034266.1 mRNA downstream 25928 81682436 ~ 81685439 (+) False LOC118936820
XR_005034269.1 mRNA downstream 25928 81682436 ~ 81685439 (+) False LOC118936820
XR_005034274.1 mRNA downstream 25928 81682436 ~ 81685439 (+) False LOC118936820
XR_005034265.1 mRNA downstream 25929 81682437 ~ 81685439 (+) False LOC118936820
TU1057588 other upstream 1541 81653391 ~ 81654391 (+) True G928929
TU1057587 other upstream 1655 81653391 ~ 81654277 (+) False G928929
TU1057515 other upstream 60180 81595003 ~ 81595752 (+) False LOC118936818
TU1057514 other upstream 60195 81579385 ~ 81595737 (+) False LOC118936818
TU1057517 other upstream 60195 81595003 ~ 81595737 (+) True LOC118936818
TU1057598 other downstream 64725 81721233 ~ 81722841 (+) False LOC110514629
TU1057735 other downstream 291602 81948110 ~ 81961513 (+) True G929033
TU1057775 other downstream 516957 82173465 ~ 82201005 (+) False LOC118936825
TU1057776 other downstream 516957 82173465 ~ 82201005 (+) False LOC118936825
TU1057850 other downstream 523278 82179786 ~ 82180426 (+) True G929113

Expression Profile