RNA id: XR_005034271.1


Basic Information

Item Value
RNA id XR_005034271.1
length 781
RNA type mRNA
GC content 0.49
exon number 3
gene id LOC118936820
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 81682434 ~ 81685439 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAACAGAGCTCTCTGCTGTCCTCCTTCTAAATAATCAAAGTCCCAGATTGTTGAAAGTCTTTATTTGTAGAATAAATACTGTAGTTGGGTTGTTTACTATGAACCTGGTGCATCACAAGACACAAACAACCGACAGATGAGGAAGTGAAGCTGGAAGTTTAAACATGAACAACATCAATAGTGAGCAAATGCGTGTGTGAACAAGTTTGAGAAAATCAAGGGCTTGGTCACTGGAGTGTTTTCATAATGGAGTCCAGTGTTCAGGTAAGGCCAGGTGAGTGTTGGTGTTGATACAGGTGTGTTCAGGTGGAGGTGAGACCAGGTTAGTGTTggtgttgatacaggtgttcaggtggaggtgagaccaggtgagtgttggtgttgatacaggtgttcaggtggaggtgagaccagGTGAGTGTTGATACAGGTGTGTTCAGGTGGAGGTGAGGCCAGGTGAGTGTTGTTGTTGATACAGGTGTGTTCAGGTGGAGGTGAGGCCAGGTGAGTGTTGATACAGGTGTGGTCAGGTGGAGGTGAGGCCAGGTGAGTGTTGGGGTTGATACAGGTGTTCAGGTGGAGGTGAGACCAGGTGAGTGTTGGTGTTGATACAGGTGTGTTCAGGCGGAGGTGAGGCCAGGTGAGTGTTggtgttgatacaggtgttcAGGTGGAGGTGAGGCCAGGTGAGTGTTGGTGTTGATACAGGTGTGTTCAGGTGGAGGTTAGGCCAGGTGAGTGATGGTATTGATACAGGTGTGTTCAGGTGGAGGTTAGGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1057591 lncRNA upstream 2801 81679392 ~ 81679639 (+) True G928932
TU1057570 lncRNA upstream 4007 81677828 ~ 81678433 (+) True G928913
TU1057572 lncRNA upstream 25932 81655932 ~ 81656508 (+) True LOC118936819
TU1057582 lncRNA upstream 43285 81636942 ~ 81639155 (+) True G928924
TU1057581 lncRNA upstream 43881 81636668 ~ 81638559 (+) True G928923
TU1057609 lncRNA downstream 17104 81702543 ~ 81702826 (+) True G928947
TU1057610 lncRNA downstream 42029 81727468 ~ 81727673 (+) True G928948
TU1057595 lncRNA downstream 44658 81730097 ~ 81731678 (+) True LOC110514629
TU1057612 lncRNA downstream 48504 81733943 ~ 81734340 (+) True G928950
TU1057616 lncRNA downstream 61600 81747039 ~ 81747672 (+) True G928954
XM_036934194.1 mRNA upstream 10102 81617460 ~ 81672338 (+) False LOC118936819
XM_036934192.1 mRNA upstream 67111 81558744 ~ 81615329 (+) False LOC118936818
XM_036934193.1 mRNA upstream 67111 81558744 ~ 81615329 (+) False LOC118936818
XM_036934189.1 mRNA upstream 147449 81526514 ~ 81534991 (+) False LOC110513527
XM_036934196.1 mRNA downstream 35791 81721230 ~ 81745845 (+) False LOC110514629
XM_036934195.1 mRNA downstream 35818 81721257 ~ 81745845 (+) False LOC110514629
XM_036934197.1 mRNA downstream 35818 81721257 ~ 81745845 (+) False LOC110514629
XM_036934198.1 mRNA downstream 37825 81723264 ~ 81745845 (+) False LOC110514629
XM_036934199.1 mRNA downstream 37942 81723381 ~ 81745845 (+) False LOC110514629
TU1057571 other upstream 25932 81635738 ~ 81656508 (+) False LOC118936819
TU1057588 other upstream 28049 81653391 ~ 81654391 (+) True G928929
TU1057587 other upstream 28163 81653391 ~ 81654277 (+) False G928929
TU1057515 other upstream 86688 81595003 ~ 81595752 (+) False LOC118936818
TU1057514 other upstream 86703 81579385 ~ 81595737 (+) False LOC118936818
TU1057598 other downstream 35794 81721233 ~ 81722841 (+) False LOC110514629
TU1057735 other downstream 262671 81948110 ~ 81961513 (+) True G929033
TU1057775 other downstream 488026 82173465 ~ 82201005 (+) False LOC118936825
TU1057776 other downstream 488026 82173465 ~ 82201005 (+) False LOC118936825
TU1057850 other downstream 494347 82179786 ~ 82180426 (+) True G929113

Expression Profile