RNA id: XM_036934195.1


Basic Information

Item Value
RNA id XM_036934195.1
length 2411
RNA type mRNA
GC content 0.52
exon number 19
gene id LOC110514629
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 81721230 ~ 81745845 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGACATGTCGTCACTGTAGTGGGGAATTCAAACTTCGACAACAGGACATCACTGAGCGAGAGGGCTGTATATTACAAATACTAAGTATATATTTCACACATTcgtgattacttttttttttgctttccTCACTATATCCAAGTTGTGTATTTAAGCTGGAAGGTTGTGTTTTCGGCGAGATGGACAGCGCGGCGGAACTCCTCAAGTACTATGAAGTCTACGAGACCATCGGCTCGGGAGGCTTTGCTAAGGTCAAGCTGGGTCGCCACATCCTGACGGGAGAGAAGGTGGCCATTAAAATCATGGAGAAGAAGGAACTGgggGAGGACCTTCCTCGTGTGAAGGTGGAGATAGAGGCCATGAAGAGTCTGAGCCATCAGCATGTCTGTAGACTGTACCATGTTATAGAGACTAATACCAAGATATACATGATCTTGGAGTATTGTCCTGGAGGAGAGCTGTTTGACTACATCGTTGCTAAGGACCGTCTGTCTGAAGAGGAGACCAGAGTGTTCTTCAGACAGATCGTCTCAGCTCTGGCCTACGTCCACAGCCAGGGGTACGCCCACAGAGACCTCAAACCGgaGAACCTGTTGATAGATGAAGACCACAACCTGAAACTGATCGACTTTGGTCTCTGTGCCAAACCAAAGGGGGGTCTGGGATATGAGCTGATGACCTGTTGTGGAAGTCCAGCCTACGCTGCTCCTGAACTCATCCAGGGGAAAGCCTACATCGGCTCGGAGGTGAGACACCCGgctgaTGTGTGGAGTATGGGGGTACTGCTGTTTGCTCTGCTCTGTGGATATCTACCCTTTGATGACGACAACTGTATGGTCCTCTACAGGAAAATCACCAGAGGTAGTTACAACAACCCTCATTGGCTGTCTCCTGGGAGCATCCTGCTACTCAACCAGATgatgcaggtggatcCTAAGCATCGTGTGACCATCAGACAACTCCTAGACCATCCCTGGACGATGTCTGGCTATGGCAGCCCTGTAGAGTGGCACAGCAAGCAACCTttGGGTTATATAGATGAGGACTGCATCACTGAGATGTCCGTCAGCCTGAAGATCTCCAGACAGAGCACCCTACAGCTGGTCAATGAGtggaaGTACGACCAGACCACTGCCACCTACCTGTTGCTGCTCTCtaagaaacagagagggaaaccTGTCCGGATCAGGCCTCAACTTCCTGTCTGTGATGTCATGTCCTGTTCACCTCAACGCCTGGGAGTACAGACTCTACTcttcgatgatgatgatgatgctgaggACCGTTGCTATGACGACGACCTGCCCTGGGTTCCACTCACACCCCAGCAAGAGAGAGCGACCTGTCCGTCAGCTGAAAAGAGGCGGGATCAGACTAAACACGCCCCCACTCCGGAGAGGGAGCCAAACGCGCACCGTCACCAGGAGAGGCGGGACCAATGCCGGGAACGGACCAATGAAAACAAAGAGAACGTTGCCGTGGCCAATAAGGATGCAGATATATTTGCTTTGCCCGCCCCCCGATCCCCAGTAGCCAATAGGAAGGCAACTCAGTCCAATAAGAGGTTCTTGACTACACCAACCCATAATAACACCAACAAGGTTGGCAACAAGCTTGACACACCCCAAGgaggAGGCAGTACTTGTAAGGACCCGTCGAggaagagaccgagggagagagtggaaggaaaggaggaagaagagatggAGATGCTGGCCTTCAGCCCAGAGAGAAGGTCCCGGTCGTTAGACCTGGCGGGGGCGTCTCGGGGGGACAGCAGCCAGAAGAGAAGGGGGGGGAAGGTTTTCGGCAGTCTGGAGAGAGGGCTGGATAAAGTCATCACCTTGCTCACACCCAGTAAGAGACGAGGGCTGCGGGACAGACCACGCAGGATCAAGgcccAGTATAATGTAACGTTGACCAGTCAGACCAACCCAGACCAGGTGTTGAACCAGATCCTCTCCATTCTACCGGAGAAACACGTCGACTTCGCACAGAAAGGctATACTCTGAAGTGTCGCACCCAGGGAGACTTTGGGAAGGTGACCATGGTGTTTGAGCTGGAGGTGTGTCTGCTGCACAGACCTGAGGTGGTGTGTGTGAGGAGACAGCGGCTGAAGGGAGACTCCTGGGTTTACAAACACCTGGTGGAGGACATTCTCTCTACGTCCAGCATCTAGACGTCACTACTTCCTGTTGATGATGTCACATCCTGTCCACGTTCCAGCACCTAAAGCCGGTGTCTTAACTAATTCCATGTTGGGCAGAGTGTCTGCAGgttcactcctcccttgtacttcattgatgaattaaggtcactgattagttaggacctcccctcacctggttgtctaggacctcccctcacctggttgtctaggacttccccctcacctggttgtctaggact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1057609 lncRNA upstream 18431 81702543 ~ 81702826 (+) True G928947
TU1057591 lncRNA upstream 41618 81679392 ~ 81679639 (+) True G928932
TU1057570 lncRNA upstream 42824 81677828 ~ 81678433 (+) True G928913
TU1057572 lncRNA upstream 64749 81655932 ~ 81656508 (+) True LOC118936819
TU1057582 lncRNA upstream 82102 81636942 ~ 81639155 (+) True G928924
TU1057616 lncRNA downstream 1194 81747039 ~ 81747672 (+) True G928954
TU1057623 lncRNA downstream 10583 81756428 ~ 81768165 (+) False G928957
TU1057624 lncRNA downstream 10583 81756428 ~ 81764254 (+) False G928957
TU1057628 lncRNA downstream 10583 81756428 ~ 81768547 (+) False G928957
TU1057630 lncRNA downstream 10583 81756428 ~ 81759896 (+) False G928957
XR_005034267.1 mRNA upstream 35818 81682437 ~ 81685439 (+) False LOC118936820
XM_036934202.1 mRNA downstream 4377 81750222 ~ 81754997 (+) False LOC110515659
XM_036934201.1 mRNA downstream 4761 81750606 ~ 81754997 (+) True LOC110515659
XR_005034276.1 mRNA downstream 183300 81929145 ~ 81942287 (+) True LOC118936822
XR_005034365.1 mRNA downstream 218239 81964084 ~ 81964825 (+) False LOC118936939
XM_036934203.1 mRNA downstream 234949 81980794 ~ 81986434 (+) True LOC118936823
TU1057571 other upstream 64749 81635738 ~ 81656508 (+) False LOC118936819
TU1057588 other upstream 66866 81653391 ~ 81654391 (+) True G928929
TU1057587 other upstream 66980 81653391 ~ 81654277 (+) False G928929
TU1057515 other upstream 125505 81595003 ~ 81595752 (+) False LOC118936818
TU1057514 other upstream 125520 81579385 ~ 81595737 (+) False LOC118936818
TU1057735 other downstream 202265 81948110 ~ 81961513 (+) True G929033
TU1057775 other downstream 427620 82173465 ~ 82201005 (+) False LOC118936825
TU1057776 other downstream 427620 82173465 ~ 82201005 (+) False LOC118936825
TU1057850 other downstream 433941 82179786 ~ 82180426 (+) True G929113
TU1057777 other downstream 450861 82196706 ~ 82201005 (+) False LOC118936825

Expression Profile