RNA id: XR_005034276.1


Basic Information

Item Value
RNA id XR_005034276.1
length 214
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC118936822
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 81929145 ~ 81942287 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caatacatttttatttgtatttgacAGAACCTGGGCTTAACAAGGGTCTGAACTTGGACCTGTTGTAGACGAAATTCACCCTCTCCAGAACCCGTTGGATTAGCGCCATGAGACGGGTTGAGAGACAGAAAACCCCGAACTACTAACGACCTACATACAGgaATAGACAAGAGTCCTTCAAAAGTGCATGGACCACAGAACAacgccccccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1057721 lncRNA upstream 2237 81924096 ~ 81926908 (+) False G929026
TU1057722 lncRNA upstream 3813 81924096 ~ 81925332 (+) True G929026
TU1057720 lncRNA upstream 5155 81923616 ~ 81923990 (+) True G929025
TU1057718 lncRNA upstream 12679 81916177 ~ 81916466 (+) True G929023
TU1057717 lncRNA upstream 14603 81913318 ~ 81914542 (+) True G929022
TU1057742 lncRNA downstream 16113 81958400 ~ 81959272 (+) False G929040
TU1057743 lncRNA downstream 16113 81958400 ~ 81959272 (+) True G929040
TU1057745 lncRNA downstream 19443 81961730 ~ 81962893 (+) True G929042
TU1057748 lncRNA downstream 21814 81964101 ~ 81965938 (+) True LOC118936939
TU1057751 lncRNA downstream 26883 81969170 ~ 81969403 (+) True G929046
XM_036934202.1 mRNA upstream 174148 81750222 ~ 81754997 (+) False LOC110515659
XM_036934201.1 mRNA upstream 174148 81750606 ~ 81754997 (+) True LOC110515659
XM_036934196.1 mRNA upstream 183300 81721230 ~ 81745845 (+) False LOC110514629
XR_005034365.1 mRNA downstream 21797 81964084 ~ 81964825 (+) False LOC118936939
XM_036934203.1 mRNA downstream 38507 81980794 ~ 81986434 (+) True LOC118936823
XM_036989408.1 mRNA downstream 55134 81997421 ~ 82120937 (+) False LOC118936694
XM_036934204.1 mRNA downstream 231044 82173331 ~ 82209334 (+) False LOC118936825
XM_036934205.1 mRNA downstream 231044 82173331 ~ 82209334 (+) False LOC118936825
TU1057598 other upstream 206304 81721233 ~ 81722841 (+) False LOC110514629
TU1057571 other upstream 272637 81635738 ~ 81656508 (+) False LOC118936819
TU1057588 other upstream 274754 81653391 ~ 81654391 (+) True G928929
TU1057587 other upstream 274868 81653391 ~ 81654277 (+) False G928929
TU1057517 other upstream 333408 81595003 ~ 81595737 (+) True LOC118936818
TU1057735 other downstream 5823 81948110 ~ 81961513 (+) True G929033
TU1057775 other downstream 231178 82173465 ~ 82201005 (+) False LOC118936825
TU1057776 other downstream 231178 82173465 ~ 82201005 (+) False LOC118936825
TU1057850 other downstream 237499 82179786 ~ 82180426 (+) True G929113
TU1057777 other downstream 254419 82196706 ~ 82201005 (+) False LOC118936825

Expression Profile