RNA id: XM_036989408.1


Basic Information

Item Value
RNA id XM_036989408.1
length 4101
RNA type mRNA
GC content 0.58
exon number 23
gene id LOC118936694
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 81997421 ~ 82120937 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccctccccctcgtcacccaccccccccacccccctcacccCCAACACCATTCCtcacccagccctcagcccctccccctcggcatcctccctcctcacccccaaCACCCATCCTCACCCAGCCCTCACCCCCTCCCGCCTTAACCTCACCCCTAACAGATCGTCCTACACAACCCTCACCCCTacaccctcccccctccacctcacCCCTCTCGGAAGAaacacagaggaagaggaggaagaggttcAATACAGACTGACTCTGGTTGGCTGCCTCCCGGTCCATCACCTGACCACCATGGCCATGCTGCCCTGGGTCGTGGCTGAGATCGGGAGGCCTCGGCCTGGGGAGAGAGACAAGCCCGTAGTGGGTCGGCCGCCCGGAAGTCCTGCAAGTAGAGGCACACACACCGGAAACGGAGAGAGCGTTTCCTCACGACGACACCaggcggtgtgtctgtgtgtgtccgccTCGTGGGTGCGGTGTGTGTGgacggaggaggaggtggagagggacaggCGACCGTGGGACCCCCTCACACACACGGTGTTGTTTGAGTGCCGGCCGCACCGCGTCACCAAGCTACTCCACAACAGCAGGGAGCCGTGTAGCTTTGGTTGTCTGGTTCGAGACACACATCTCTGTTACTGCTACGTCTTCCAATGCCAGGACTGCACCAAggtccCTGAGATCATCAGTACGCTGCGTCAGGCCGGGAAGAGCTCGGCGCGCAACGATGACCTCGCGGCGCCCAAACCCGCCGCCTCTTCCTCAGAAGACTGTACTCCGTCCGCGTCGTCGGCCTTCGGCGCTGCCACCATGTTCGCCAAGAGGTTTGAGGTTCTGTTCTGTGGAAGAGTGACCGTCGCTCACAAGAAAGCCCCGCCCGCCTTGATTGACGAGTGCATCGAGAAATTCAGCCAATCCGTAGGGGCCGGGGGCGATCCTAAACCAGAAAGTGGCGGTGGATTGGTGGACGGGCTGCGGAGAGCTCTGGCCTTGCCGACGCTAACGCGAGATGGAGGAACTGGGGATGGAGAGGTCAGGGGAGGAGGATACGGTGCCTCTAGTGGTGGGAGGCCGGTGGTGTTCCAACCAGACCCCAGTTTCCCCTGCCTCCGGGCCCTGGATGAGAACGGCCTGTCAcctgaactacacacacacaccgctgggGTCCAGCCCACCAGTCTACAGGAGAACAGGACCATGCTGTTCAtgGTGGGTCGGTCTCAGATCTTCCTGGTCAGTCCAGACACTAAGAAGGTTGCCATAGAGAAGAGCTTCAGAGAAATATCTTTCTGCTCACAGggtatTCATCATGTGGATCACTTTGGGTTCATCTGTAGAGAGACAGTAGAAGGAGGGAGCTGTACATTCGTCTGCTATGTCTTCCAGTGTACTGATGAATCCCTGGTGGATGAGATCATGTTGACTTTAAAGCAGGCGTTCTCTGTGGCCGCCCTGCAGCAGAGTGTAAGGACCAGGAGCCAGCAGTGTGACAGTTGCCCCATGCAGCAGCTGCACAGGCTGTGTGAGAGGATAGAAGGTCTCCTCCCGTCTAAAGCCAAGCTCGAGTTTCAGAAACATCTGGCCACACTGGACAACCAGGAACAAGCTGCTGTGTTCGAGCACACTGTgagggccAGTCCTAAGAGTGACCAGGAGGAGAACGAGCTGGTGATGGGGTCTTTGAGGAGTCTGTATGAACAGAAACAGAGGAGTCATCAACACACAGATCACAGACCGgtACCAGAGGCTCCAGCCCCAGTAGAGGTCCAGTCCAGTAGCAGACAGAGATTAGAGCAGTTTAAAACCAGAGCAAAACGCTCCCTCACAGAGTCACTGGAGGGCATCTGGAAGGGAAGTAGCAAAACCAGGgctcagagagagaacagtgaaggAGACATCAGTTCATCTGACTCTACACTgaactctactagacaggacCCCTCCCTAGAagaccccctcccctcctccaatCCTCTGCGGTCTCACAACTCTACAGGGGACCTGAAACGTCtggacacctctcctctctccgtctctccttccttctcatccctgtctctgtcctcccggGACGCACGGTCCCAGCCGCATGGCTTCAGGCGGAGAGCCAGCACCTTCAGCCACTCCCCTTCCTACCACGATCACGCCCCTTCCTACCCTGACCACACCCCctcgtatacacacacaccccaggtaCCCAGCGGCTCCACCAAGCCCAAACTGGTCCGGCACTACTCTGTCAGCACCGACACTCCGCACCAGAGCAAACGACTCCAGGCGGACCCTactcttcctttcctctccttcccctctcctcttctctctcatcgaccctcatccccctctctcggGGGTCGCCTGGCCAAACGAAGTCCTCTGGGAGGTCTGCGCGCTCgtctccgctcctcctcctctgttcccaaCTTCCTCAAACTCCTCGCTCCTGTCCACGAGAGCCACCCCTGTGACTTAGACAAGAGGAGtgacgTAGCAGCCCTGTCCAGTCcggtagcagtgtgtgtggtagGAGACAGTCCTCTACGGAGACACTCCTGGAGACAACAGATCTTCCTTCGTGTCGCTACCCCTCAGAAAAACACTGACAGCAatgaCAGGGGTGACTGCTCCCTAGATGGCAGGGGCGTGTCTGTGTGCGGGGTTGGAGACGGATCACTGGGCGTGGTTCCGGAAGAGAGGAAGAAACGTGGCCGAGCAGAACTGAGACGGCTGTGGAGGAAGGCCATCCTGCAACAGACACTACTgctgaggatggagagagagaacaacaagatacaggCGTCGGAGAGCAAACGCCAGCGTCTGGACTATGAGGAGATAACTCCCTGTCTGAAGGACGTCACGCTGGTCTGGGAGAGCATGCTGGGAACTCAGGCCAGGTCGAAGGTCAAGTTCAACACCGACACGGTCCACTCTGCTGTCGAACAGggagTTCCTAGACAGTACAGAGGAGAGGTGTGGAAGTTCCTGTCAGAGCAGTTTGTATTGAGACAACCGGTTCCTGTCAGATCTCCATCTGACAACAGGCCTTATAAAGAACTGCTGAAACAACTGACCTCCcaacagcacgccatcctcatagacctgggtcGTACCTTTCCGACCCATCCTTATTTCCAGGCTCAGTTGGGGTCTGGTCAGCTGTCTCTCTATAACCTCCTGAAGGCCTACTCTCTACTGGACCCAGAGgtGGGATACTGTCAGGGTCTCAGCTTCGTAGCAGGAGTGTTGTTGTTGCACATGGGAGAGGAGGACGCCTTCAACATGCTCCAGTTCCTCATGTATCATATGGGGCTTCGCAAGCAGTACAGACCTGACATGATAATACTACAGATTCAGATGTACCAGCTGTCTCGTCTCCTCCATGACTACCACAGAGACCTGTACGTCCATCTGGAACAGCATGAGATAGGACCGTCTCTCTACGCTGCTCCCTGGTTCCTCACGGCCTTCGCCTCGCACTTCCCTCTGGGCTTCGTAGCCAGGGTGTTTGacatGCTGTTTCTCCAGGGTTCGGAGGTGATCTTCAAGGTGTCGCTAAGTCTTCTGGGTAGTCACAAGCCCTTGATCCTACAGCACGACAGTCTGGAGTCTATAGTGGACTTCATCAAGACTACACTACCTAACCTGGGACTGGTCCAGATGGAGAAGACCATCAACCAGgTGTGTGAGATGGACCTGTCCAATCAGCTGCAGGCGTACGAGGTGGAGTACCACGTCTTACAGGACGAGCTGTGTGACACGCCCGCTCACCTCAACCAATCGCAGCGCACCGCCCAGCTGGAACGCACTAATCAGAGCCTCCGACAGCAAAACCTCGACCTGCTGGAGGAACtgcagGTGTCCCAGGCTCGTGTGTGTCGTCTGGAAGGCCAGGTGGAGGGGCTGGCCCAATCGGAGGCTCTGCTGAGAGAACGGGTGTTcgacctggaggaggagaggaacggacTGCGGAGCGCCgtcacacacctgcacacactcCTCACCGCActgggaatacacacacacacaacgcacgGGGACTTCAACCTGgaccctcacacacactccactgCCGACACAGATGAACACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1057784 lncRNA upstream 601 81996603 ~ 81996820 (+) True G929063
TU1057782 lncRNA upstream 2790 81993827 ~ 81994631 (+) True G929062
TU1057761 lncRNA upstream 5913 81990867 ~ 81991508 (+) True G929053
TU1057754 lncRNA upstream 26869 81970272 ~ 81970552 (+) True G929049
TU1057751 lncRNA upstream 28018 81969170 ~ 81969403 (+) True G929046
TU1057772 lncRNA downstream 5156 82126093 ~ 82126901 (+) True G929057
TU1057834 lncRNA downstream 8575 82129512 ~ 82129797 (+) True G929101
TU1057835 lncRNA downstream 10073 82131010 ~ 82131240 (+) True G929102
TU1057836 lncRNA downstream 10384 82131321 ~ 82131658 (+) True G929103
TU1057837 lncRNA downstream 11611 82132548 ~ 82132806 (+) True G929104
XM_036934203.1 mRNA upstream 10987 81980794 ~ 81986434 (+) True LOC118936823
XR_005034365.1 mRNA upstream 32596 81964084 ~ 81964825 (+) False LOC118936939
XR_005034276.1 mRNA upstream 55134 81929145 ~ 81942287 (+) True LOC118936822
XM_036934202.1 mRNA upstream 242424 81750222 ~ 81754997 (+) False LOC110515659
XM_036934201.1 mRNA upstream 242424 81750606 ~ 81754997 (+) True LOC110515659
XM_036934204.1 mRNA downstream 52394 82173331 ~ 82209334 (+) False LOC118936825
XM_036934205.1 mRNA downstream 52394 82173331 ~ 82209334 (+) False LOC118936825
XR_005034278.1 mRNA downstream 52394 82173331 ~ 82209334 (+) False LOC118936825
XR_005034279.1 mRNA downstream 52394 82173331 ~ 82209334 (+) False LOC118936825
XR_005034280.1 mRNA downstream 52394 82173331 ~ 82209334 (+) False LOC118936825
TU1057735 other upstream 35908 81948110 ~ 81961513 (+) True G929033
TU1057598 other upstream 274580 81721233 ~ 81722841 (+) False LOC110514629
TU1057571 other upstream 340913 81635738 ~ 81656508 (+) False LOC118936819
TU1057775 other downstream 52528 82173465 ~ 82201005 (+) False LOC118936825
TU1057776 other downstream 52528 82173465 ~ 82201005 (+) False LOC118936825
TU1057850 other downstream 58849 82179786 ~ 82180426 (+) True G929113
TU1057777 other downstream 75769 82196706 ~ 82201005 (+) False LOC118936825
TU1057878 other downstream 92943 82213880 ~ 82215718 (+) True LOC110510824

Expression Profile