RNA id: TU1057769


Basic Information

Item Value
RNA id TU1057769
length 2697
lncRNA type read_through
GC content 0.46
exon number 3
gene id LOC118936694
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 81997421 ~ 82120937 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTAGAagaccccctcccctcctccaatCCTCTGCGGTCTCACAACTCTACAGGGGACCTGAAACGTCtggacacctctcctctctccgtctctccttccttctcatccctgtctctgtcctcccggGACGCACGGTCCCAGCCGCATGGCTTCAGGCGGAGAGCCAGCACCTTCAGCCACTCCCCTTCCTACCACGATCACGCCCCTTCCTACCCTGACCACACCCCctcgtatacacacacaccccaggtaCCCAGCGGCTCCACCAAGCCCAAACTGGTCCGGCACTACTCTGTCAGCACCGACACTCCGCACCAGAGCAAtgacgTAGCAGCCCTGTCCAGTCcggtagcagtgtgtgtggtagGAGACAGTCCTCTACGGAGACACTCCTGGAGACAACAGATCTTCCTTCGTGTCGCTACCCCTCAGAAAAACACTGACAGCAatgaCAGGGGTGACTGCTCCCTAGATGGCAGGGGCGTGTCTGTGTGCGGGGTTGGAGACGGATCACTGGGCGTGGTTCCGGAAGAGAGGAAGAAACGTGGCCGAGCAGAACTGAGACGGCTGTGGAGGAAGGCCATCCTGCAACAGACACTACTgctgaggatggagagagagaacaacaagatacagggtaacagaatggagagagaacaacaagatacaggataacagaatggagagagagagaacaacaagatacagggtaacagaatggagagagagaacaacaagatacaggataacagaatggagagagagagaacaacaagatacagggtaacagaatggagagagagagaacaacaagatacagggtaacagaatggagagagaacaacaagatacagggtaacagaatggagagagagagaacaacaagatacagggtaacagaatggagagagaacaacaagatacagggtaacagaatggagagagaacaacaagatacagggtaacagaatggagagagagagaacaacaagatacagggaacagaatggagagagaacaacaagatacagggtaacagaatggagagagagagaacaacaagatacagggtaacagaatggagagagagagaacaacaagatacagggtaacagaatggagagagagagaacaacaagatacagggtaacagaatggagagagaacaacaagatacagggtaacagaatggagagagagagaacaacaagatacagggtaacagaatggagagaacaacaagatacagggtaacagaatggagagagaacaacaagatacaggataacagaatggagagagagagaacaacaagatacagggtaacagaatggagagaacaacaagatacagggtaacagaatggagagagaacaacaagatacaggataacagaatggagagagagaacaacaagatacagggtaacagaatggagagagagagaacaacaagatacagggtaacagaatggagagagaacaacaagatacagggtaacagaatggagagagagagaacaacaagatacagggtaacagaatggagagaacaacaagatacagggtaacagaatggagagagaacaacaagatacagggtaacagaatggagagagaacaacaagatacagggtaacagaatggagagagagagaacaacaagatacagggtaacagaatggagagagagagaacaacaagatacagggtaacagaatggagagagagagaacaacaagataCAGGGTAACATAATGGAGAGAACAACAAGATACAgggtaacagaatggagagagagagaacaacaagatacagggtaacagaatggagagagagagaacaacaagatacagggtaacagaatggagagaacaacaagatacagggtaacagaatggagagagagagaacaacaagataCAGGGTAACATAATGGAGAGAACAACAAGATACAgggtaacagaatggagagagagagagaacaacaagatacagggtaacagaatggagagagagagaacaacaagatacagggtaacagaatggagagaacaacaagatacagggtaacagaatggagagagaacaacaagatacagggtaacagaatggagagagaacaacaagatacagggtaacagaatggagagagaacaacaagatacagggtaacagaatggagagagaacaacaagatacagggtaacagaatggagagagaacaacaagatacagggtaacagaatggagagagaacaacaagatacagggtaacagaatggagagagaacaacaagatacaggataacagaatggagagagaacaagatacagggaacagaatggagagagagagaacagctggtTGAGGTTATTTGAGGATATAGACAGAGCGTCATGAACCCAATCAACCCTGCTcaatcacacacacccacacccaggTGAAACTGGCATGTCTAGGGCAACCATAAAGGGATCGTTAATTGTCCTCTAGGAATTCAACAACATGAAATACTTAGAATTAGATGTTGTcatcgggtgtgtgtgtgtgtggtcttaccTGGTGAAGGTACAGTTCAGGTGAGGTTGAGCCGTGTGTTGCCAGGGGTTACGCCCAACCTCACGGCGGTTTGGGAACCGAAACGTCGCTGCGTTGAATCCCGACGAGGTGAAACAAATCTGTCTCTGTACAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1057815 lncRNA upstream 8336 82050526 ~ 82051275 (+) True G929087
TU1057814 lncRNA upstream 15665 82043670 ~ 82043946 (+) True G929086
TU1057809 lncRNA upstream 18154 82040588 ~ 82041457 (+) True G929084
TU1057798 lncRNA upstream 45204 82013403 ~ 82014407 (+) True G929073
TU1057792 lncRNA upstream 51852 82007264 ~ 82007759 (+) False G929068
TU1057824 lncRNA downstream 14188 82096326 ~ 82097580 (+) False G929095
TU1057825 lncRNA downstream 14188 82096326 ~ 82097828 (+) False G929095
TU1057823 lncRNA downstream 14504 82096642 ~ 82098221 (+) False G929095
TU1057826 lncRNA downstream 14504 82096642 ~ 82098832 (+) True G929095
TU1057827 lncRNA downstream 19562 82101700 ~ 82103252 (+) True G929096
XM_036934203.1 mRNA upstream 73177 81980794 ~ 81986434 (+) True LOC118936823
XR_005034365.1 mRNA upstream 94786 81964084 ~ 81964825 (+) False LOC118936939
XR_005034276.1 mRNA upstream 117324 81929145 ~ 81942287 (+) True LOC118936822
XM_036934202.1 mRNA upstream 304614 81750222 ~ 81754997 (+) False LOC110515659
XM_036934204.1 mRNA downstream 91193 82173331 ~ 82209334 (+) False LOC118936825
XM_036934205.1 mRNA downstream 91193 82173331 ~ 82209334 (+) False LOC118936825
XR_005034278.1 mRNA downstream 91193 82173331 ~ 82209334 (+) False LOC118936825
XR_005034279.1 mRNA downstream 91193 82173331 ~ 82209334 (+) False LOC118936825
XR_005034280.1 mRNA downstream 91193 82173331 ~ 82209334 (+) False LOC118936825
TU1057735 other upstream 98098 81948110 ~ 81961513 (+) True G929033
TU1057598 other upstream 336770 81721233 ~ 81722841 (+) False LOC110514629
TU1057571 other upstream 403103 81635738 ~ 81656508 (+) False LOC118936819
TU1057775 other downstream 91327 82173465 ~ 82201005 (+) False LOC118936825
TU1057776 other downstream 91327 82173465 ~ 82201005 (+) False LOC118936825
TU1057850 other downstream 97648 82179786 ~ 82180426 (+) True G929113
TU1057777 other downstream 114568 82196706 ~ 82201005 (+) False LOC118936825
TU1057878 other downstream 131742 82213880 ~ 82215718 (+) True LOC110510824

Expression Profile