RNA id: XR_005034279.1


Basic Information

Item Value
RNA id XR_005034279.1
length 3220
RNA type mRNA
GC content 0.49
exon number 7
gene id LOC118936825
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 82173331 ~ 82211022 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCCGAGCCGACCGGACCCGACCCCACCCCTCGTCTCCCCTGCGAACCCACTCCAGTCCCGCCCTACGCCCGCGGTCACGTGACACGCTCAACAACGCACTCGCTGTGTCTCCGGAGAaatagaggagaagaagaagaatttcGTAACCGGGGGAAGTTTTGTTTCCGTGCCAGTCCCGACTTTATCTGTCATTCggagtttttgttgtttttccaaACGGCGATCGGTTGACCAATACGTGTGACACGGTTTTGTTATTTTCGACTGCGACACTTTTTTTTTAACAGAACGGAATTTAAAacggatttatttattttttattttttattttttaccttacGCACGGAGACAGTTTACTAAGAGATTTAAACAACGGGAATAATTCACGAATAAACACACAATATTCTCCATTGTAAAgtctGGCTGCAGTCATGATGGTGTATGACTTTCCACTGAAGACAGACATGGAGACGGTGAGACTggagTCTCTCTATCAGTCTTATCCCTCGGTAGTGAACAGCGTTATCTTCACCCCTCATCCCTACCACCCCACacaatacgcacacacacacaccttctccccctcacacacactcacacacgcccaGTCCGCCAACCCCACCTCAAATACACAACTCGAACCAGTCGACTTGTCGGTCAGCAAAcgaccctctccctcctcctcctcctccccttcctcctgttcctccactTCCTCCCCGTACAGTCGTTCCTCCCCCcagccctccccctccctccattaccCCGTGTTGTTAGGCTCCGGCCCCGGGGTCGTCCAGGGTTCAGGGGTCATGCTGTCCCAGGTCATGCTACAACCCTtgtccatcctctacccctcctccccgCTGCACCTGCCTCAGCCAATCGCGGTCAACCGAACCGTCGCTGGCGAcgaccaccaccatcatcatcatcatcaccatcacaggCCGGCAGGAAGCTCACAACATCAGACAGAATCCTCCATGAAGTCAGAGCTCAGAGGCGACGCACACCACAAGCTAATCAAAACAGAGCATGCCCACGACTCATACAACCAGGAAATGACCTCATCGGTCATCAGCGCGCCACAGGCCTATAGCGAtAACAACCCGTCTGTCATCGTCCATTCTGGGGTTAATCACCCGTTGCCAATCGAGTCTCCGGACTCGATGAAGAAGAGACGAATCCACCGTTGTGATTTCAACAGCTGCAACAAAGTCTACACCAAGAGCTCTCATCTGAAGGCACATCGccgcacacacacaggagagaAGCCCTATAAGTGCATGTGGGAGGGGTGCACGTGGAAGTTCGCCCGTTCGGACGAACTGACTCGTCACTTCCGTAAACATACAGGCGTCAAACCGTTCCAGTGTCCCGACTGTGAACGCAGCTTCTCCCGATCGGACCACCTGGCTCTACATAAGAAACGACATCTGCTGGTCTGAACAGCAACACAACGGCTGTGAAACGTCTGTTCGACACACAAGGCATGGCGAACGCAGCCCGTTGGATAGTTGGTCCATACCGACCCCAAGACAAGACCAATGCCGTTGAACAGAGAGAGACCCCGGGACTTAAACATCCTCTATCTGTCTATCACTTTATTCAGTCAGCCGATCAGccgtcctcttcctctccactcctccacctcttcttaGTACCAGAGCTCGCCGTTGTCTCCCAGTACTCGCCGTTGTCTCCCAGTGCTCGCCGTTGTCTCCCAGTGCTCGCCGTTGTCTCCCAGTGCTGAAGGCGGATGGTGTTCGTAGgcccagatctaggatcagctaaaCCTCCAGACGTCTTGACCTTaaccatagagagagacagacatcttaaccttaaccatagagatagacagacatcTTGACCTTaaccatagagagagacagacatcttaaccttaaccatagagatagacagacatcTTGACCTTAaccatagagatagacagaggtcttaaccatagagatagacagaggtcttaaccatagagatagacagaggtcTTAACCATAGAGCTAGAACGAGGACTCAACTTTGTACGGCGTCTGTGACGGCATGGGCAGCGCCAATGATCGCCATTTtaaagtgatacattttttaaatatatatatatatatattttaaagcagATATTTGTGATTTTAGCGCCATCTGCAGTGCCGGAGTCCTGAACCACATTTAGTCTTACGTTTattgtggccactagatggcggTGATATGGCTCCATGCCATTAACAAACTGTAACAACCTATTTGAAGAAGAAGAAGGCTGATCGCTCTCAAACCCCATAAGGATTCCCTACCCagtttgactactttaaaatggtggaagtccTCGATGTCCatgctaaaaaaaaaatggatacaGCACCACAGATACAACGATTAGACAGATGTttcaccatatatatatatatagatatatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagagcgagggagagaaacgTTTGTTAACGGCTGACCTGAGATTAGAGTCAACGTGGACTGagtggctccctctgctggacgGAGGGGACTACCTGCTGCTCAGTActcagtggacacacacacacacagctcaacagCCTGTACTGACTCTAGTCACATGAGTGGAGTCACAGGTCAACAGCAGGCTCTGGTAGAGGGGGTAGAAGGGTTGTGGGGGTTCCCAACCACAGGTCAACAGCAGGCTCTGGTAGAAGGGCTGTGGGGGTTCCCAACCACAGGTCAACAGCAGGCTCTGGTAGAGGGAGGGGAACGGCTGTGGGGGTTCCTAACCACAGGTCAACAGCGGGCTCTGGTAGAGGGGGTGGAAGGGCTGTGGGGGTTCCTAACCACAGGTCAACAGCAGGCTCTGGTAGAGGGAGGGGAACGGCTGTGGGGGTTCCCAACCATTACAAGGCAAAGGCTTGTTGTCTTTGATTCTAGAAATGTGAAACAAACTCTTTTTATTATCCTGGGGCATTATCATGATCATTATTCTGTTTGATTATTTTTTAttcttattattataataattgttgttgttgttgttgttctgtaaGTAAAATACTTCCATTGAGCCGGTTGAAAGTGGACTCGGCGATATGACATCATCATATACGGCAGGAAGCAGGGTGACTTCCTGCTTTACaaaactcaacaacaacaacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1057841 lncRNA upstream 12583 82159897 ~ 82160748 (+) False G929107
TU1057842 lncRNA upstream 12583 82160206 ~ 82160748 (+) True G929107
TU1057837 lncRNA upstream 40525 82132548 ~ 82132806 (+) True G929104
TU1057836 lncRNA upstream 41673 82131321 ~ 82131658 (+) True G929103
TU1057835 lncRNA upstream 42091 82131010 ~ 82131240 (+) True G929102
TU1057763 lncRNA downstream 201 82209535 ~ 82211022 (+) False LOC118936825
TU1057765 lncRNA downstream 201 82209535 ~ 82211022 (+) True LOC118936825
TU1057892 lncRNA downstream 7245 82216579 ~ 82217229 (+) True G929130
TU1057893 lncRNA downstream 11719 82221053 ~ 82226653 (+) True G929131
TU1057926 lncRNA downstream 53591 82262925 ~ 82264031 (+) True G929145
XM_036989408.1 mRNA upstream 52394 81997421 ~ 82120937 (+) False LOC118936694
XM_036934203.1 mRNA upstream 186897 81980794 ~ 81986434 (+) True LOC118936823
XR_005034365.1 mRNA upstream 208506 81964084 ~ 81964825 (+) False LOC118936939
XR_005034276.1 mRNA upstream 231044 81929145 ~ 81942287 (+) True LOC118936822
XM_036934201.1 mRNA upstream 418334 81750606 ~ 81754997 (+) True LOC110515659
XM_036934209.1 mRNA downstream 3114 82212448 ~ 82232854 (+) False LOC110510824
XM_036934213.1 mRNA downstream 3114 82212448 ~ 82232854 (+) False LOC110510824
XM_036934212.1 mRNA downstream 3114 82212448 ~ 82232974 (+) False LOC110510824
XM_036934211.1 mRNA downstream 3114 82212448 ~ 82232976 (+) False LOC110510824
XM_036934210.1 mRNA downstream 3949 82213283 ~ 82232854 (+) False LOC110510824
TU1057735 other upstream 211818 81948110 ~ 81961513 (+) True G929033
TU1057598 other upstream 450490 81721233 ~ 81722841 (+) False LOC110514629
TU1057571 other upstream 516823 81635738 ~ 81656508 (+) False LOC118936819
TU1057878 other downstream 4546 82213880 ~ 82215718 (+) True LOC110510824
TU1057903 other downstream 82616 82291950 ~ 82304282 (+) False LOC118936827
TU1057946 other downstream 99469 82308803 ~ 82309572 (+) False G929159
TU1057948 other downstream 99469 82308803 ~ 82309572 (+) True G929159
TU1058175 other downstream 532100 82741434 ~ 82742780 (+) False LOC118936830

Expression Profile