RNA id: TU1057776


Basic Information

Item Value
RNA id TU1057776
length 912
RNA type TUCP
GC content 0.51
exon number 4
gene id LOC118936825
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 82173331 ~ 82211022 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aagaatttcGTAACCGGGGGAAGTTTTGTTTCCGTGCCAGTCCCGACTTTATCTGTCATTCggagtttttgttgtttttccaaACGGCGATCGGTTGACCAATACGTGTGACACGGTTTTGTTATTTTCGACTGCGACACTTTTTTTTTAACAGAACGGAATTTAAAacggatttatttattttttattttttattttttaccttacGCACGGAGACAGTTTACTAAGAGATTTAAACAACGGGAATAATTCACGAATAAACACACAATATTCTCCATTGTAAAGCTGAGGCTTCCGTCACACATTCCACTTGGCACATGAAGCCCCCTATCCTGTTTAGAAACCTGGGAGggatgtgtgggatacagaggtctGGCTGCAGTCATGATGGTGTATGACTTTCCACTGAAGACAGACATGGAGACGTCTCTCTATCAGTCTTATCCCTCGGTAGTGAACAGCGTTATCTTCACCCCTCATCCCTACCACCCCACacaatacgcacacacacacaccttctccccctcacacacactcacacacgcccaGTCCGCCAACCCCACCTCAAATACACAACTCGAACCAGTCGACTTGTCGGTCAGCAAAcgaccctctccctcctcctcctcctccccttcctcctgttcctccactTCCTCCCCGTACAGTCGTTCCTCCCCCcagccctccccctccctccattaccCCGTGTTGTTAGGCTCCGGCCCCGGGGTCGTCCAGGGTTCAGGGGTCATGCTGTCCCAGGTCATGCTACAACCCTtgtccatcctctacccctcctccccgCTGCACCTGCCTCAGCCAATCGCGGTCAACCGAACCGTCGCTGGCGAcgaccaccaccatcatcatcatcatcaccatcacaggCCGGCAGGAAGCTCACAACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1057841 lncRNA upstream 12717 82159897 ~ 82160748 (+) False G929107
TU1057842 lncRNA upstream 12717 82160206 ~ 82160748 (+) True G929107
TU1057837 lncRNA upstream 40659 82132548 ~ 82132806 (+) True G929104
TU1057836 lncRNA upstream 41807 82131321 ~ 82131658 (+) True G929103
TU1057835 lncRNA upstream 42225 82131010 ~ 82131240 (+) True G929102
TU1057885 lncRNA downstream 1922 82202927 ~ 82203688 (+) True G929127
TU1057766 lncRNA downstream 7532 82208537 ~ 82210018 (+) False LOC118936825
TU1057763 lncRNA downstream 8530 82209535 ~ 82211022 (+) False LOC118936825
TU1057765 lncRNA downstream 8530 82209535 ~ 82211022 (+) True LOC118936825
TU1057892 lncRNA downstream 15574 82216579 ~ 82217229 (+) True G929130
XM_036989408.1 mRNA upstream 52528 81997421 ~ 82120937 (+) False LOC118936694
XM_036934203.1 mRNA upstream 187031 81980794 ~ 81986434 (+) True LOC118936823
XR_005034365.1 mRNA upstream 208640 81964084 ~ 81964825 (+) False LOC118936939
XR_005034276.1 mRNA upstream 231178 81929145 ~ 81942287 (+) True LOC118936822
XM_036934201.1 mRNA upstream 418468 81750606 ~ 81754997 (+) True LOC110515659
XM_036934209.1 mRNA downstream 11443 82212448 ~ 82232854 (+) False LOC110510824
XM_036934213.1 mRNA downstream 11443 82212448 ~ 82232854 (+) False LOC110510824
XM_036934212.1 mRNA downstream 11443 82212448 ~ 82232974 (+) False LOC110510824
XM_036934211.1 mRNA downstream 11443 82212448 ~ 82232976 (+) False LOC110510824
XM_036934210.1 mRNA downstream 12278 82213283 ~ 82232854 (+) False LOC110510824
TU1057735 other upstream 211952 81948110 ~ 81961513 (+) True G929033
TU1057598 other upstream 450624 81721233 ~ 81722841 (+) False LOC110514629
TU1057571 other upstream 516957 81635738 ~ 81656508 (+) False LOC118936819
TU1057878 other downstream 12875 82213880 ~ 82215718 (+) True LOC110510824
TU1057903 other downstream 90945 82291950 ~ 82304282 (+) False LOC118936827
TU1057946 other downstream 107798 82308803 ~ 82309572 (+) False G929159
TU1057948 other downstream 107798 82308803 ~ 82309572 (+) True G929159
TU1058175 other downstream 540429 82741434 ~ 82742780 (+) False LOC118936830

Expression Profile