RNA id: TU1057766


Basic Information

Item Value
RNA id TU1057766
length 1263
lncRNA type sense_over
GC content 0.46
exon number 2
gene id LOC118936825
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 82173331 ~ 82211022 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaaacgTTTGTTAACGGCTGACCTGAGATTAGAGTCAACGTGGACTGagtggctccctctgctggacgGAGGGGACTACCTGCTGCTCAGTActcagtggacacacacacacacagctcaacagCCTGTACTGACTCTAGTCACATGAGTGGAGTCACAGGTCAACAGCAGGCTCTGGTAGAGGGAGGGGAACGGCTGTGGGGGTTCCTAACCACAGGTCAACAGCAGGCTCTGGTAGAAGGGCTGTGGGGGTTCCCAACCACAGGTCAACAGCAGGCTCTGGTAGAGGGAGGGGAACGGCTGTGGGGGTTCCCAACCATTACAAGGCAAAGGCTTGTTGTCTTTGATTCTAGAAATGTGAAACAAACTCTTTTTATTATCCTGGGGCATTATCATGATCATTATTCTGTTTGATTATTTTTTAttcttattattataataattgttgttgttgttgttgttctgtaaGTAAAATACTTCCATTGAGCCGGTTGAAAGTGGACTCGGCGATATGACATCATCATATACGGCAGGAAGCAGGGTGACTTCCTGCTTTACaaaactcaacaacaacaacaagactcAAACCCCAATGGGTGGCCATCTTGGCAGGTTTGGTGACTTCCTGCTTTACAaaactcaacaacaacaagactCAAACCCCAATGGGTGGCCATCTTGGCAGGTTTGGTGACTTCCTGCTTTACAaaactcaacaacaacaagactCAAACTCCAATGGGTGGCCATCTTGGCAGGTTTGATGCCTACCCCCCCTCACGTCCTGTCTGTGTGATGACATCACGACATCTCACTGACTCTCTCCATCTAACACTAGCTATCAGCAGTGACTGGCATAGTTCCACTAtcctgtgagtgagtgagtgtgtgtgtgtgtcaacaacAGTGGTTTTACATTTGGTATCATATGATGTGATTGTCTGATAGTTTTGTTATTGTATGACGTGGTTTTAATATTCAGAGGGTAAAGAGCCCAGGTGTCAAACAGGGATGAGTTGTTGGTAGATCGTCTTGTCCtccgtttacacaggcagccccaattctgatctttttcacCCGCACTAATtcgtcttttgaccaatcagatctgcTCTTTGGCCAATAATTGGGCGAAAGATCAGAATtggggctgcctgtgtaaacgcagccatataAACGTACTGCTTATGAAAGTTACCTTCTGGTGACCAGATTGTATTGTACATAGTCTATATAGTGAGGCCAGAGGATGCCAGAGGGGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1057885 lncRNA upstream 4849 82202927 ~ 82203688 (+) True G929127
TU1057773 lncRNA upstream 5949 82173465 ~ 82202588 (+) False LOC118936825
TU1057861 lncRNA upstream 10304 82197092 ~ 82198233 (+) False G929121
TU1057862 lncRNA upstream 10304 82197445 ~ 82198233 (+) True G929121
TU1057855 lncRNA upstream 17887 82188025 ~ 82190650 (+) False G929117
TU1057892 lncRNA downstream 6561 82216579 ~ 82217229 (+) True G929130
TU1057893 lncRNA downstream 11035 82221053 ~ 82226653 (+) True G929131
TU1057926 lncRNA downstream 52907 82262925 ~ 82264031 (+) True G929145
TU1057935 lncRNA downstream 79146 82289164 ~ 82290432 (+) True G929154
TU1057936 lncRNA downstream 82551 82292569 ~ 82292988 (+) True G929155
XM_036989408.1 mRNA upstream 87600 81997421 ~ 82120937 (+) False LOC118936694
XM_036934203.1 mRNA upstream 222103 81980794 ~ 81986434 (+) True LOC118936823
XR_005034365.1 mRNA upstream 243712 81964084 ~ 81964825 (+) False LOC118936939
XR_005034276.1 mRNA upstream 266250 81929145 ~ 81942287 (+) True LOC118936822
XM_036934201.1 mRNA upstream 453540 81750606 ~ 81754997 (+) True LOC110515659
XM_036934209.1 mRNA downstream 2430 82212448 ~ 82232854 (+) False LOC110510824
XM_036934213.1 mRNA downstream 2430 82212448 ~ 82232854 (+) False LOC110510824
XM_036934212.1 mRNA downstream 2430 82212448 ~ 82232974 (+) False LOC110510824
XM_036934211.1 mRNA downstream 2430 82212448 ~ 82232976 (+) False LOC110510824
XM_036934210.1 mRNA downstream 3265 82213283 ~ 82232854 (+) False LOC110510824
TU1057775 other upstream 7532 82173465 ~ 82201005 (+) False LOC118936825
TU1057776 other upstream 7532 82173465 ~ 82201005 (+) False LOC118936825
TU1057777 other upstream 7532 82196706 ~ 82201005 (+) False LOC118936825
TU1057850 other upstream 28111 82179786 ~ 82180426 (+) True G929113
TU1057735 other upstream 247024 81948110 ~ 81961513 (+) True G929033
TU1057878 other downstream 3862 82213880 ~ 82215718 (+) True LOC110510824
TU1057903 other downstream 81932 82291950 ~ 82304282 (+) False LOC118936827
TU1057946 other downstream 98785 82308803 ~ 82309572 (+) False G929159
TU1057948 other downstream 98785 82308803 ~ 82309572 (+) True G929159
TU1058175 other downstream 531416 82741434 ~ 82742780 (+) False LOC118936830

Expression Profile