RNA id: TU1057765


Basic Information

Item Value
RNA id TU1057765
length 1339
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id LOC118936825
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 82173331 ~ 82211022 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGTCCTGTCTGTGTGATGACATCACGACATCTCACTGACTCTCTCCATCTAACACTAGCTATCAGCAGTGACTGGCATAGTTCCACTAtcctgtgagtgagtgagtgtgtgtgtgtgtcaacaacAGTGGTTTTACATTTGGTATCATATGATGTGATTGTCTGATAGTTTTGTTATTGTATGACGTGGTTTTAATATTCAGAGGGTAAAGAGCCCAGGTGTCAAACAGGGATGAGTTGTTGGTAGATCGTCTTGTCCtccgtttacacaggcagccccaattctgatctttttcacCCGCACTAATtcgtcttttgaccaatcagatctgcTCTTTGGCCAATAATTGGGCGAAAGATCAGAATtggggctgcctgtgtaaacgcagccatataAACGTACTGCTTATGAAAGTTACCTTCTGGTGACCAGATTGTATTGTACATAGTCTATATAGTGAGGCCAGAGGATGCCAGAGGGGGCCAGAGGGGGCCAGAGGGGGCCAGAGGGGACCAGAGGGGACCAGAGGGGGCCAAGAGGCGactagaggagaccagaggagaccagaggagactagaggagactagaggagaccagaggagaccagagagTCTAGTGGAGACCAGTGAGCCTGCAGAGTAAAGAAAACTAGAGAGCACTTTAAAACCATTCACAGAACCAGACAACCAGCACATTCTCATTCAAATCCATTCATTATTCCATCAATCATTTGTTGGTTGGTTGAATGATGCGTTGATGTATTGATTGACACATTATTAAACTCAGTTCAAGTTACAagtcacagatctgggatcagttttacCATCCCACAGTCCTTAACCATTAACCCTGAGGAGAGGGAAACagtcacagatctgggatcagttttacCATCCCACAGTCCTTAACCATTAACCCTGAGGAGAGGGAAACagtcacagatctgggatcagttttacCATCCCACAGTCCTTAACCATTAACCCTGAGGAGAGGGAAACagtcacagatctgggatcagttttagCATCCCACAGTCCTTAACCATTAACCCTGAGGAGAGGGAAACAGTcacagatctagggtcagtttTAGCGTCCCACAGTCCTTAACCTTTAACCCTGAGGAGAGGGAAACATCAGACTGACCCAATATCACTGTTTTGGGATTAATGTAATCTGCCTTTTTCATTTAATAGCaggattatacacacacacacacgtttggttTGCGTTTGGTTTTTTAACTATGCAGATGTAATATGATGATGAATTGTTGTAATATATTTTATAAATGATTATTAGACTGAAATGGGCAATTAAAGGTATTTTATAAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1057885 lncRNA upstream 5847 82202927 ~ 82203688 (+) True G929127
TU1057861 lncRNA upstream 11302 82197092 ~ 82198233 (+) False G929121
TU1057862 lncRNA upstream 11302 82197445 ~ 82198233 (+) True G929121
TU1057855 lncRNA upstream 18885 82188025 ~ 82190650 (+) False G929117
TU1057892 lncRNA downstream 5557 82216579 ~ 82217229 (+) True G929130
TU1057893 lncRNA downstream 10031 82221053 ~ 82226653 (+) True G929131
TU1057926 lncRNA downstream 51903 82262925 ~ 82264031 (+) True G929145
TU1057935 lncRNA downstream 78142 82289164 ~ 82290432 (+) True G929154
TU1057936 lncRNA downstream 81547 82292569 ~ 82292988 (+) True G929155
XR_005034280.1 mRNA upstream 201 82173331 ~ 82209334 (+) False LOC118936825
XM_036934209.1 mRNA downstream 1426 82212448 ~ 82232854 (+) False LOC110510824
XM_036934213.1 mRNA downstream 1426 82212448 ~ 82232854 (+) False LOC110510824
XM_036934212.1 mRNA downstream 1426 82212448 ~ 82232974 (+) False LOC110510824
XM_036934211.1 mRNA downstream 1426 82212448 ~ 82232976 (+) False LOC110510824
XM_036934210.1 mRNA downstream 2261 82213283 ~ 82232854 (+) False LOC110510824
TU1057775 other upstream 8530 82173465 ~ 82201005 (+) False LOC118936825
TU1057776 other upstream 8530 82173465 ~ 82201005 (+) False LOC118936825
TU1057777 other upstream 8530 82196706 ~ 82201005 (+) False LOC118936825
TU1057850 other upstream 29109 82179786 ~ 82180426 (+) True G929113
TU1057735 other upstream 248022 81948110 ~ 81961513 (+) True G929033
TU1057878 other downstream 2858 82213880 ~ 82215718 (+) True LOC110510824
TU1057903 other downstream 80928 82291950 ~ 82304282 (+) False LOC118936827
TU1057946 other downstream 97781 82308803 ~ 82309572 (+) False G929159
TU1057948 other downstream 97781 82308803 ~ 82309572 (+) True G929159
TU1058175 other downstream 530412 82741434 ~ 82742780 (+) False LOC118936830

Expression Profile