RNA id: XM_036934209.1


Basic Information

Item Value
RNA id XM_036934209.1
length 4417
RNA type mRNA
GC content 0.46
exon number 13
gene id LOC110510824
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 82212448 ~ 82232976 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACTCTTCCCTCTCTGACGCGCTCCCGGGGGGTGACGTCACCTCCCATAGGCACCGACGGACGACACGCGCATCCCTGTCTACGTGGCGGGGCGGAAGGAGCGCGTCTAGCGGAGAGAGTTGTCAGCAGCGAGACTAACCGatgaacaTGTCTGACTCCAACCCTCCCATATTCCCCCCcgctcctctctctgacccctcccACACCGACGCCAACCCCCCaggagaagacacacacacagctctcccgCCTCCCACACCCATCCCCCAGCCCTCGTTGGCCACGGAGGGTTCCGAGGGCTCTGAGCCAGCCAACCAGGTGGCAGGAGAGGACGTGACCAGGGACGACAGAGATGAGGCTCCTATTGACCAATCAGGGGGCGGCGGCGGCGTGGAGGATCAGGTGACTGAGTGTGGCCAATTGGTGAGCCTGGAGGCGGAGACCGCTGCTGccgagggggaggaagaggacTCTCTTCAGGTCAAGGGGAAAGGTTGGGGTGGATGGGGCTCCTGGGGGAAGTCTCTACTGACCAGTGCCACGTCTACTGTGGgtAACAGTCTAACTTCAGTAAAGGAGAAGGCCGGAGCTCTGCGTCTTCACAGGACCTCAGTAGGAGAGGAGGCgcgagaggagggggaggaggagaggaaggagggaggagaggaagaggaggatagctGTCCTCAGTCAGCCCTGGTCACTACTCCACCACCAAGCAGAGGAGTACTGTCTACCATCACACACGCTGGTAAATCAGTGATCAGTGGAGGTCTCGATGCCTTAGAGTTCATCGGTAAGAGAACCATGACGGTCCTGGCAGAGACTGACCCTGGTTTCAGGAAGACCAAGATACTAATGCAGAGGACTGTCTCACTCAGccagATGCTGAAGGATgccaaagagaaggagagggctcGTCTCAGCTGCCAGCCAATCAGTGAGCCCACAGCTCACTACGGAATCCTGTTTGATGACTACCAGGGCCTATCACACCTAGAGGCTCTGGAGATACTGGCCAATGAGAGTGAGGCTAAGgTTCAGtcgttcctctcctccctggaAGAGGAGGATCAGGAGGAGATAAAGAAAGAACTGATCGCCATCAAGGACATCTTCGTCAGCCacacgggagaggaggaggagggagagggcgaggagaagaaggagggagaggagacagtggaTAAGGGTGATCTAAGTCCCCAGTGTTCTACTCCTCTGTCAGCTGATGGGGAGGAGTTTGTGAGCGTCCTGACTGAGTTGCTGTTTGAGCTTCACGTCGCTGCCACcccagacaaactgaacaagGCCAGGATGAGAGCGCATGATTgggtgagagaggtggagaaaccTGTCGTCGTCACGGAAACCATCGGGGGGGCGACGGAGGAGGAGCAAAGAGGAGAACCTGAaacaagagagggagaagaagagaagaaagagggggaggagctggaggagaagaaagaggaggaggagctaaaggagaagaaagaggaggagaaagaggaggaggagctaaaggagaagaaagaggaggagaaagaggaggaggagctaaaggagaagaaagaggaggagaaagaggaggaggagctaaaggaggaggaggtaaaggagaagaaagagggggaggagataaaggagaatgaggaagagagacgATCCAGGTCTGTAGAGgcagTGTACCTCTGTTCAGTGGGCTCCCTGGCGGAGGTGACAGCCCGCAGTATCGAACAGCTCCACAAGGTGGCAGAGTTGATCCTCCACGGACAGGACCTGGAGAAACCTGCCAGAGACCAGGCTCACATACTCACCAGGTTGACGTGTGCCATGTGTCGGGAGGTGGGTTGTCTTGCCAGGAAGTTCTCTGATACTCTGCTCACCGTTGGGGTTCAGAGAAAAGCAGAAGAGTTGAACCCTTTGGTAGACAGTGTGCTGCTTGAGGGTTCTAACAGCACCACATACATCCAGAACGCCTTCCAGCTCCTCCTCCCGGTTCTCCAGATGTCACACATCCAGACCCACAGCTCTAGAACCCGCACGGAACCACAGCCCTAACCCCGTCGTAGCCACAGTAAACACACCTCATACTGCTGAAGTGCTGTGAGCATACTAGCCCGTCCTAATGATGTAACTATGTACAGGAAGataatgtgatatatatatatatattaataacaGCGATACGGAAGTCAACTCCTAGGTTGCCATAGTAACAGACTAGACTAGGATATCCGTAAACTATGACGTAATGCAGTAACTTGGTATAGTTTCATGTAGGGTACAACTTCTCAGATTGAAGAGCTTGTACTCATGTCTATTGAGCATCTCCAAATTGattattttattatatatatatatgtattactGTTCAGAGGTAAATCTAAACATGATTCATGTCAACTGGCTAATTTAACCCGGTGTATCAGATTATGTCTTATCGTTTTATAAAGCGAAACcaaaaaaaatagttttgttGTTAGAGTTTGTTTTTAGTGTCACGTAAAACCAGATCCGTACAGTGTAATTTGTCCGCTCAGGTGTTCGAACCAGAGACCTTTGGGTTCCTCTGGGCCCAACGCGCTAATCGCTAGGCTACATGCCGCAGGTATTGATGTTCCCTGCTTAATGAAGGTGGGTTTCTTTACATCGCAGAACAACTAACCTTGTTGAAATGGCAGAACAACTAACCTTGTTGAAATGGTAGAACAACTAACCTTGTTTACATGGCAGAACAACTAGCCTTGTTTACATGGTAGAACAACTAACCTTGTTGAAATGGTAGAACAACTAACCTTGTTGAAATGGTAGAACAACTAACCTTGTTGAAATGGTAGAACAACTAGCCTTGTTGAAATGGCAGAACAACTAACCTTGTTGAAATGGTAGAACAACTAACCTTGTTGAAATGGTAGAACAACTAACCTTGTTGAAATGGTAGAACAACTAACCTTGTTGAAATGGTAGAACAACTAACCTTGTTGAAATGGCAGAACAACTAACCTTGTTGAAATGGTAGAACAACTAACCTTGTTGAAATGGTAGAACAACTAACCTTGTTGAAATGGTAGAACAACTAACCTTGTTTACATGGTAGAACAACTAACCTTGTTGAAATGGTAGAACAACTAACCTTGTTGAAATGGTAGAACAACTAACCTTGTTGAAATGGTAGAACAACTAACCTTGTTGAAATGGCAGAACAACTAACCTTGTTGAAATGGTAGAACAACTAACCTTGTTGAAATGGTAGAACAACTAACCTTGTTGAAATGGTAGAACAACTAACCTTGTTGAAATGGTAGAACAACTAACCTTGTTGAAATGGTAGAACAACTAACCTTGTTGAAATGGTAGAACAACTAACCTTGTTGAAATGGTAGAACAACTAACCTTGTTTACATGGTAGAACAACTAACCTTGTTGAAATGGTAGAACAACTAACCTTGTTGAAATGGTAGAACAACTAACCTTGTTGAAATGGTAGAACAACTAACCTTGTTGAAATGGCAGAACAACTAACCTTGTTGAAATGGTAGAACAACTAACCTTGTTGAAATGGTAGAACAACTAACCTTGTTGAAATGGTAGAACAACTAACCTTGTTGAAATGGTAGAACAACTAACCTTGTTGAAATGGTAGAACAACTAGCCTTGTTGAAATGGTAGAACAACTAACCTTGTTGAAATGGTAGAACAACTAACCTTGTTGAAATGGTAGAACGACTAACCTTGTTGAAATGGTAGAACAACTAACCTTGTTGAAATGGCAGAACAACTAACCTTGTTGAAATGGTAGAACAACTAACCTTGTTGAAATGGTAGAACAACTAACCTTGTTGAAATGGTAGAACAACTAGCCTTGTTGAAATGGTAGAACAACTAACCTTGTTGAAATGGCAGAACAACTAACCTTGTTGAAATGGCAGAACAACTAACCTTGTTGAAATGGTAGAACAACTAACCTTGTTGAAATGGTAGAACAACTAACCTTGTTGAAATGGTAGAACAACTAACCTTGTTGAAATGGTAGAAGAACTAGCCTTGTTGAAATGGTAGAACAACTAACCTTGTTTACATGGTAGAACAACTAACCTTGTTTAAATGGTAGAACAACTAACCTTGTTGAAATGGTAGAACGACTAACCTTGTTGAAATGGTAGAACAACTAACCTTGTTGAAATGGTAGAACAACTAGCCTTGTTGAAATGGTAGAACAACTAACCTTGTTGAAATGGTAGAACAACTAGCCTTGTTGAAATGGTAGAACAACTAACCTTGTTGAAATGGTAGAACAACTAACCTTGTTGAAATGGCAGAACAACTAACCTTGTTTACATGGTAGAACAACTAACCTTGACATTAACGGACAAAGACAAAAAAAGGACCAGAACTATAATGTTCTatattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1057763 lncRNA upstream 1426 82209535 ~ 82211022 (+) False LOC118936825
TU1057765 lncRNA upstream 1426 82209535 ~ 82211022 (+) True LOC118936825
TU1057766 lncRNA upstream 2430 82208537 ~ 82210018 (+) False LOC118936825
TU1057885 lncRNA upstream 8760 82202927 ~ 82203688 (+) True G929127
TU1057773 lncRNA upstream 9860 82173465 ~ 82202588 (+) False LOC118936825
TU1057926 lncRNA downstream 30071 82262925 ~ 82264031 (+) True G929145
TU1057935 lncRNA downstream 56310 82289164 ~ 82290432 (+) True G929154
TU1057936 lncRNA downstream 59715 82292569 ~ 82292988 (+) True G929155
TU1057900 lncRNA downstream 60251 82293105 ~ 82297328 (+) False LOC118936827
TU1057906 lncRNA downstream 60251 82293105 ~ 82296846 (+) True LOC118936827
XM_036934204.1 mRNA upstream 3114 82173331 ~ 82209334 (+) False LOC118936825
XM_036934205.1 mRNA upstream 3114 82173331 ~ 82209334 (+) False LOC118936825
XR_005034278.1 mRNA upstream 3114 82173331 ~ 82209334 (+) False LOC118936825
XR_005034279.1 mRNA upstream 3114 82173331 ~ 82209334 (+) False LOC118936825
XR_005034280.1 mRNA upstream 3114 82173331 ~ 82209334 (+) False LOC118936825
XM_036934222.1 mRNA downstream 28434 82261288 ~ 82306725 (+) False LOC118936827
XM_036934220.1 mRNA downstream 41373 82274227 ~ 82306700 (+) False LOC118936827
XM_036934221.1 mRNA downstream 41373 82274227 ~ 82306700 (+) False LOC118936827
XM_036934219.1 mRNA downstream 41376 82274230 ~ 82306700 (+) False LOC118936827
XM_036934223.1 mRNA downstream 83867 82316721 ~ 82392281 (+) False LOC118936828
TU1057775 other upstream 11443 82173465 ~ 82201005 (+) False LOC118936825
TU1057776 other upstream 11443 82173465 ~ 82201005 (+) False LOC118936825
TU1057777 other upstream 11443 82196706 ~ 82201005 (+) False LOC118936825
TU1057850 other upstream 32022 82179786 ~ 82180426 (+) True G929113
TU1057735 other upstream 250935 81948110 ~ 81961513 (+) True G929033
TU1057903 other downstream 59096 82291950 ~ 82304282 (+) False LOC118936827
TU1057946 other downstream 75949 82308803 ~ 82309572 (+) False G929159
TU1057948 other downstream 75949 82308803 ~ 82309572 (+) True G929159
TU1058175 other downstream 508580 82741434 ~ 82742780 (+) False LOC118936830
TU1058178 other downstream 508580 82741434 ~ 82742780 (+) True LOC118936830

Expression Profile