RNA id: XR_005034283.1


Basic Information

Item Value
RNA id XR_005034283.1
length 1337
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC118936830
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 82740970 ~ 82780517 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCATTGAGAGAGTCCGTGATGACAGTTCACATCTTGTTTTATTTAAGTCGCAGGTTGATGACATCACCAGTCTATATAAAAAAGGCAGGATATGAAAGGATCTGTTCAATCTGAAACGACACCCTCTATAGGGCCGTACGTTGGACCAGGAGAGCACCATGAAAGGGGACATTATTTAAGACTCACATTATTTATGTCTGTATAAAATCGGAACCAGTGATTGGCCAGTTACAACAGGAAATTAGACAGTATTAATGTGATTGGCCAGTTATAACAGGAAATGAGGCAGTATTAATGTGATTGGCCGGTTATAACAGGACATGAGACAGTATTAACGTGATTGGCCAGTTATAACAGGAAATGAGAGACAGTTAATTAATGTGATTAGTCAGTTATAACAGGAAATGAGAGGCAGTATTAATGTGATTGGCCGGTTATAACAGGAAATGAGAGGCAGTATTAATGTGATTGGCCGGTTATAACAGGAAATGAGAGGCAGTATTAATGTGATTGGCCGGTTATAACAGGAAATGAGAGGCAGTATTAATGTGATTGGCCGGTTATAACAGGAAATGAGAGGCAGTATTAATGTGATTGGCCGGCTATAACAGGAAATGAGAGGCAGTATTAATGTGATTGGCCGGTTCTAACAGGAAATGAGAGGCAGTATTAATGTGATTGGTCAGTTATAACAGGAAATAAAACCGGCAGCATCAAAACATATTGATTATCAATGATAGTCCTCGTAGAGGAAGAATGgtaggtgagggggggggggggggggtgattctgaggggtgtgtgtgtcagagtcagACTTTGGTCTTCTTGGTCGGGGGTTCAGGGTTGAtgttgaggggtgtgtgtgtgtcagagtcagACTTTGGTCTTCTTGGTCGGGGGTTCAGGGTTGAtgctgaggggggtgtgtgtgtcagagtcagACTTTGGTCTTCTTGGTCGAGGGTTCAGGGTTGATGTTGAGgggtgtgtgtcagactgtggtCTTCTTGGTCGGGGGTTCAGGGTTGAtgttgaggggtgtgtgtgtgtcagagtcagACTGTGGTCTTCTTGGTCGGGGGTTCAGGGTTGAtgttgaggggtgtgtgtgtcagagtcagACTGTGGTCTTCTTGGTCGGGGGTTCAGGGTTGATGTTGAGGGGTGTGTGTCAGAGTCAGACTGTGGTCTTCTTGGTCGGGGGTTCAGGGTTGAtgttgaggggtgtgtgtgtcagagtcagACTTTGGTCTTCTTGGTCGGGGGTTCAGGGTTGATGCTGAGGGGTGTGTGTCAGACTTTGGTCTTCTTGGTCGGGGGTTCAGGGTTGAtgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1058099 lncRNA upstream 1345 82738738 ~ 82739793 (+) False G929258
TU1058106 lncRNA upstream 1345 82738738 ~ 82739793 (+) False G929258
TU1058104 lncRNA upstream 1345 82739135 ~ 82739793 (+) True G929258
TU1058096 lncRNA upstream 15072 82719519 ~ 82726066 (+) True G929257
TU1058090 lncRNA upstream 20197 82719519 ~ 82720941 (+) False G929257
TU1058181 lncRNA downstream 6296 82748888 ~ 82749196 (+) True G929302
TU1058184 lncRNA downstream 17899 82760491 ~ 82761057 (+) False G929304
TU1058183 lncRNA downstream 18191 82760783 ~ 82761057 (+) True G929304
TU1058186 lncRNA downstream 22165 82764757 ~ 82765033 (+) True G929306
TU1058188 lncRNA downstream 24434 82767026 ~ 82767410 (+) True G929307
XM_036934228.1 mRNA upstream 2468 82727415 ~ 82738670 (+) True LOC110512972
XM_036934225.1 mRNA upstream 339898 82316721 ~ 82401240 (+) False LOC118936828
XM_036934226.1 mRNA upstream 339898 82316721 ~ 82401240 (+) True LOC118936828
XM_036934223.1 mRNA upstream 348857 82316721 ~ 82392281 (+) False LOC118936828
XM_036934221.1 mRNA upstream 434438 82274227 ~ 82306700 (+) False LOC118936827
XM_036934238.1 mRNA downstream 51061 82793653 ~ 82811450 (+) False LOC118936832
XM_036934240.1 mRNA downstream 51061 82793653 ~ 82811450 (+) False LOC118936832
XM_036934241.1 mRNA downstream 51061 82793653 ~ 82811450 (+) False LOC118936832
XM_036934237.1 mRNA downstream 51062 82793654 ~ 82811450 (+) False LOC118936832
XM_036934242.1 mRNA downstream 51063 82793655 ~ 82811450 (+) False LOC118936832
TU1057946 other upstream 431566 82308803 ~ 82309572 (+) False G929159
TU1057948 other upstream 431566 82308803 ~ 82309572 (+) True G929159
TU1057903 other upstream 436856 82291950 ~ 82304282 (+) False LOC118936827
TU1057878 other upstream 525420 82213880 ~ 82215718 (+) True LOC110510824
TU1057777 other upstream 540133 82196706 ~ 82201005 (+) False LOC118936825
TU1058185 other downstream 19013 82761605 ~ 82762488 (+) True G929305
TU1058109 other downstream 50917 82793509 ~ 82798322 (+) True LOC118936832
TU1058236 other downstream 173204 82915796 ~ 82919230 (+) False LOC110512617
TU1058232 other downstream 185133 82927725 ~ 82933167 (+) False LOC110512617
TU1058233 other downstream 185133 82927725 ~ 82931861 (+) False LOC110512617

Expression Profile