RNA id: TU1058170


Basic Information

Item Value
RNA id TU1058170
length 981
lncRNA type read_through
GC content 0.48
exon number 3
gene id LOC118936830
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 82740970 ~ 82780517 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGATTGGCCGGTTATAACAGGACATGAGACAGTATTAACGTGATTGGCCAGTTATAACAGGAAATGAGAGACAGTTAATTAATGTGATTAGTCAGTTATAACAGGAAATGAGAGGCAGTATTAATGTGATTGGCCGGTTATAACAGGAAATGAGAGGCAGTATTAATGTGATTGGCCGGTTATAACAGGAAATGAGAGGCAGTATTAATGTGATTGGCCGGTTATAACAGGAAATGAGAGGCAGTATTAATGTGATTGGCCGGTTATAACAGGAAATGAGAGGCAGTATTAATGTGATTGGCCGGCTATAACAGGAAATGAGAGGCAGTATTAATGTGATTGGCCGGTTCTAACAGGAAATGAGAGGCAGTATTAATGTGATTGGTCAGTTATAACAGGAAATAAAACCGGCAGCATCAAAACATATTGATTATCAATGATAGTCCTCGTAGAGGAAGAATGgtaggtgagggggggggggggggggtgattctgaggggtgtgtgtgtcagagtcagACTTTGGTCTTCTTGGTCGGGGGTTCAGGGTTGAtgttgaggggtgtgtgtgtgtcagagtcagACTTTGGTCTTCTTGGTCGGGGGTTCAGGGTTGAtgctgaggggggtgtgtgtgtcagagtcagACTGTGGTCTTCTTGGTCGGGGGTTCAGGGTTGATGTTGAGGGGTGTGTgtcagACTTTGGTCTTCTTGGTCGGGGGTTCAGGGTTGATGCTGAGGGGTGTGTGTCAGACTTTGGTCTTCTTGGTCGGGGGTTCAGGGTTGAtgttgaggggtgtgtgtgtcagagtcagACTTTGGTCTTCTTGGTCGGGGGTTCAGGGTTGAtgttgaggggtgtgtgtgtcagagtcagACTTTGGTCTTCTTGGTCGGGGGTTCAGGGTTGATGCTGATACGAGGGACTCCGGCCGTGGGTGTGTAGGGGATACGAGATGTCGTCAACTTCTTACCGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1058099 lncRNA upstream 1641 82738738 ~ 82739793 (+) False G929258
TU1058106 lncRNA upstream 1641 82738738 ~ 82739793 (+) False G929258
TU1058104 lncRNA upstream 1641 82739135 ~ 82739793 (+) True G929258
TU1058096 lncRNA upstream 15368 82719519 ~ 82726066 (+) True G929257
TU1058090 lncRNA upstream 20493 82719519 ~ 82720941 (+) False G929257
TU1058181 lncRNA downstream 6108 82748888 ~ 82749196 (+) True G929302
TU1058184 lncRNA downstream 17711 82760491 ~ 82761057 (+) False G929304
TU1058183 lncRNA downstream 18003 82760783 ~ 82761057 (+) True G929304
TU1058186 lncRNA downstream 21977 82764757 ~ 82765033 (+) True G929306
TU1058188 lncRNA downstream 24246 82767026 ~ 82767410 (+) True G929307
XM_036934228.1 mRNA upstream 2764 82727415 ~ 82738670 (+) True LOC110512972
XM_036934225.1 mRNA upstream 340194 82316721 ~ 82401240 (+) False LOC118936828
XM_036934226.1 mRNA upstream 340194 82316721 ~ 82401240 (+) True LOC118936828
XM_036934223.1 mRNA upstream 349153 82316721 ~ 82392281 (+) False LOC118936828
XM_036934219.1 mRNA upstream 434734 82274230 ~ 82306700 (+) False LOC118936827
XM_036934238.1 mRNA downstream 50873 82793653 ~ 82811450 (+) False LOC118936832
XM_036934240.1 mRNA downstream 50873 82793653 ~ 82811450 (+) False LOC118936832
XM_036934241.1 mRNA downstream 50873 82793653 ~ 82811450 (+) False LOC118936832
XM_036934237.1 mRNA downstream 50874 82793654 ~ 82811450 (+) False LOC118936832
XM_036934242.1 mRNA downstream 50875 82793655 ~ 82811450 (+) False LOC118936832
TU1057946 other upstream 431862 82308803 ~ 82309572 (+) False G929159
TU1057948 other upstream 431862 82308803 ~ 82309572 (+) True G929159
TU1057903 other upstream 437152 82291950 ~ 82304282 (+) False LOC118936827
TU1057878 other upstream 525716 82213880 ~ 82215718 (+) True LOC110510824
TU1057777 other upstream 540429 82196706 ~ 82201005 (+) False LOC118936825
TU1058185 other downstream 18825 82761605 ~ 82762488 (+) True G929305
TU1058109 other downstream 50729 82793509 ~ 82798322 (+) True LOC118936832
TU1058236 other downstream 173016 82915796 ~ 82919230 (+) False LOC110512617
TU1058232 other downstream 184945 82927725 ~ 82933167 (+) False LOC110512617
TU1058233 other downstream 184945 82927725 ~ 82931861 (+) False LOC110512617

Expression Profile