RNA id: XM_036934238.1


Basic Information

Item Value
RNA id XM_036934238.1
length 1992
RNA type mRNA
GC content 0.49
exon number 8
gene id LOC118936832
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 82793509 ~ 82811450 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagatatagagaggtagagagatagagagagagaggtagagatatagaggtagagagagagatagacagtgatagagagaaagatatagagggagagagaaagagagagaggaggattggAGAGTGTAACAGAAGATATCCACACAGCAACGGGAGTGGACCGAGGCCCGACCAGGTGTAACATCCCGCTACTGGACGGAGGGCGACGGCAGAGCCATGGCGAATATAGCGGTCCAGAGGATCAAACGGGAGTTCAAAGAAGTTCTCAAAAGCGAAGAgacgAGTAAAAACCAGATCAAGGTGGATCTGGTAGATGAAAACTTCACAGAGCTGCGAGGAGAGATCGCAGGACCACCAGACACGCCGTAcgaagGTGGCAGATTTCAACTGGAAATCAAAATCCCAGAAACGTATCCCTTTAACCCTCCCAAGgtgaGGTTCATCACTAAGATCTGGCACCCCAACATCAGCTCAGTAACAGGAGCCATCTGTCTGGACATCCTCAAAGACCAGTGCTCAGTAACAGGAGCCATCTGTCTGGACATCCTCAAAGACCCGTGGGCAGCAGCGATGACTCTGAGGACAGTACTGTTGTCCCTCCAGGCTCTTCTGGCTGCAGCTGAACCAGACGACCCCCAGGATGCAGTAGTGGCCAATCAGTATAAGCAGAACCCAGAGATGTTTACGCAGACAGCCAGGTTATGGGCCCATTACTACAGTGGAGCCCCTGTTCCCGGTCCAGAATACACACGGAAGATAGACAAACTCACTGCCATGGGCTTCGAAAAGaacgctgtaatcgctgccttGTCTTCTAAATCCTGGGAGGTGGAGACGGCGACAGAACTACTCCTTAACAACTGAGACCCGGCAAGAAACCCCCTCTGACCTCATCTCCCTTCTCCTTATGGTGCCCTCCGATGCCTTCTAACCACAGCCCAAACGGAGCCTTGACTGGGGTTGATGTCCTAGAGTTTCCAGCCCTGCCCTCCCCGTCCAAGTCACTTCCTGGTATCCTTTCAGCCCaaacatcacccccccccccccccctccaccaatCCCTTTCTTTTTGGTTCTTCGCTTGATGAACTCTTACTTTCCGTCTTTTAAGAAGCCCGACATTGAACCACTGTCACCTGGTGGAGCTAACTGGCGGAGAGAGACGGGAGGACGAGGATTTATCTGTAAATAAACCTCACCTGGTGGAGCTAACTGGCGGAGAGAGACGGGAGGACGAGGATTTATCTGTAAAATAAATATTAGTTCTTAACAAATACACAGCGGAATACTTCCTGGATATTGTTAAAAATAAACTGTGCTTCAGTTTTACTCACGACTAGAAGGAAAGAAATTGCCTCGCTTACTATTTTGGTCGGCCCGACCAGGGAGTTCGTCCGAATGTCCCGGTGAAGTGACGCCTGCGTCGTCGTTGTCCCTCACGCTCCTCTTTCCCAGACGAATCCTGTGCACAGTCTCTTTCTCGACGAAGAAGATACCTCTTCATCAGCAGAGAAAACCACCGACCTACCGGCTGGATCTATATTTtataaaggagaaaaaaaaaggaCTCTTCCCTCTTTTCGCTGTCTTCCTGTTCCACTTCAGCACGACGGAGAAGATAAAGAACTGCACGGCAGAGTAGAGACCACCCACCCCCCCCATAAgtctctggccaaaagtagtgcactgtataggagaTAGGCTGCCATTTTGTTTTTGTTATcagtttggatttgttttctgAAGGAAACAGCAGCCGTCACACCTGGGTCCAGAtgctatttgaaatctttcagcTTTAGTCTGCCAGATGGGAGGGGCTTGGAGTATTTTATTGGCCCGTGAAGCAAACTCAGTCTAGCACAGAAAAAGGGGTTTGAAATGATATTGAGGATGGTATTTGAACCGGGGTGTGGCCGGCATACAATCGCATGATTATTTATTGTGAGACTGTCAACGTTTACTTTTATTAAAAAAACAACCTGGAAAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1058174 lncRNA upstream 13136 82740970 ~ 82780517 (+) False LOC118936830
TU1058119 lncRNA upstream 17963 82774328 ~ 82775690 (+) True G929267
TU1058188 lncRNA upstream 26243 82767026 ~ 82767410 (+) True G929307
TU1058186 lncRNA upstream 28620 82764757 ~ 82765033 (+) True G929306
TU1058184 lncRNA upstream 32596 82760491 ~ 82761057 (+) False G929304
TU1058197 lncRNA downstream 1754 82813204 ~ 82813628 (+) True G929316
TU1058210 lncRNA downstream 28249 82839699 ~ 82840188 (+) True G929323
TU1058220 lncRNA downstream 44757 82856207 ~ 82857225 (+) False G929328
TU1058221 lncRNA downstream 44757 82856207 ~ 82857225 (+) True G929328
TU1058244 lncRNA downstream 73290 82884740 ~ 82887716 (+) False G929341
XR_005034283.1 mRNA upstream 51061 82741138 ~ 82742592 (+) False LOC118936830
XM_036934228.1 mRNA upstream 54983 82727415 ~ 82738670 (+) True LOC110512972
XM_036934225.1 mRNA upstream 392413 82316721 ~ 82401240 (+) False LOC118936828
XM_036934226.1 mRNA upstream 392413 82316721 ~ 82401240 (+) True LOC118936828
XM_036934223.1 mRNA upstream 401372 82316721 ~ 82392281 (+) False LOC118936828
XM_036989409.1 mRNA downstream 94280 82905730 ~ 82955813 (+) False LOC110512617
XM_036934270.1 mRNA downstream 149621 82961071 ~ 82976330 (+) False LOC110515053
XM_036934267.1 mRNA downstream 149623 82961073 ~ 82976329 (+) False LOC110515053
XM_036934268.1 mRNA downstream 149623 82961073 ~ 82976329 (+) False LOC110515053
XR_005034285.1 mRNA downstream 149623 82961073 ~ 82976330 (+) False LOC110515053
TU1058185 other upstream 31165 82761605 ~ 82762488 (+) True G929305
TU1058175 other upstream 50873 82741434 ~ 82742780 (+) False LOC118936830
TU1058178 other upstream 50873 82741434 ~ 82742780 (+) True LOC118936830
TU1057946 other upstream 484081 82308803 ~ 82309572 (+) False G929159
TU1057948 other upstream 484081 82308803 ~ 82309572 (+) True G929159
TU1058236 other downstream 104346 82915796 ~ 82919230 (+) False LOC110512617
TU1058232 other downstream 116275 82927725 ~ 82933167 (+) False LOC110512617
TU1058233 other downstream 116275 82927725 ~ 82931861 (+) False LOC110512617
TU1058227 other downstream 130344 82941794 ~ 82949168 (+) False LOC110512617
TU1058230 other downstream 130364 82941814 ~ 82949168 (+) False LOC110512617

Expression Profile