RNA id: TU1058228



Basic Information


Item Value
RNA id TU1058228
length 906
RNA type TUCP
GC content 0.45
exon number 4
gene id LOC110512617
representative True

Chromosome Information


Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 82905730 ~ 82956331 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cagggtcatCTCCATGGTCAGAAGATGCATGAAGCCAATCACCGAGCGGCGGCCCAGATCTTTGAGCGGGTCAACTCCTCCCTGCTGCCTCAGAACGTTCTAGATCTCCACGGACTGCATGTCGACGAGGCCTTACTCCACCTGTCAcaggtgttagagaggaagaccacagaGTGTCAGCAGGGTGTGTGTAGGTCTCAGCTGtcagttataacaggaagagggAACCACAGCCAGGGAGGAGTGGCTCGTATCCGCCCTGCTGTCATAGACTACCTCAACACACAGGGCTACAGgTTTACTGAGCCTAAGCCAGGTCTGTTGTTGGTGTGTCTGAACTGAGATGAAGCTGTGATGTGACTGACTGTCCTTATCCAGACActactgtctcctccccctctcccctggaatctacctctaccacttcctctctcacatacacaaaaaacacacccttctctctctctgtctctctctctctctctgtctctctctctgtctctctctctctctgtatctctctctctctgtctctctctctctctgtctctctctctctctctctctctctctctctgtctgtctgtctgtctgtctctccctgtctctctctgtctgtctgtctctccctgtctctctctgtctgtctgtctctccctgtctctaacaATTATTTTAATAGCTGCCGAAGAAATTGTCTTAATCtatttttatgtcttcactgttGCCATGTTTGtacaatatttttgtttttgtatgAAACTTTATCAGGATTTACAAACAATGACAGAGCGAGAGTTCattttaaattatattaaatgtagatttttagATTTTATAAAACCATGTCAATCTAAGTGTATATCATTTATCTTAACATGATGTTTCTGTAATGGTGAATGTGTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1058252 lncRNA upstream 435 82952090 ~ 82952710 (+) True G929346
TU1058244 lncRNA upstream 65429 82884740 ~ 82887716 (+) False G929341
TU1058245 lncRNA upstream 65725 82884740 ~ 82887420 (+) True G929341
TU1058220 lncRNA upstream 95920 82856207 ~ 82857225 (+) False G929328
TU1058221 lncRNA upstream 95920 82856207 ~ 82857225 (+) True G929328
TU1058273 lncRNA downstream 23241 82979572 ~ 82980453 (+) True G929353
TU1058277 lncRNA downstream 28480 82984811 ~ 82985911 (+) True G929355
TU1058285 lncRNA downstream 47667 83003998 ~ 83004589 (+) True G929360
TU1058289 lncRNA downstream 55480 83011811 ~ 83012084 (+) True G929364
TU1058293 lncRNA downstream 75211 83031542 ~ 83031777 (+) True G929368
XM_036934240.1 mRNA upstream 141695 82793653 ~ 82811450 (+) False LOC118936832
XM_036934270.1 mRNA downstream 4740 82961071 ~ 82976330 (+) False LOC110515053
XM_036934267.1 mRNA downstream 4742 82961073 ~ 82976329 (+) False LOC110515053
XM_036934268.1 mRNA downstream 4742 82961073 ~ 82976329 (+) False LOC110515053
XR_005034285.1 mRNA downstream 4742 82961073 ~ 82976330 (+) False LOC110515053
XR_005034286.1 mRNA downstream 4742 82961073 ~ 82976330 (+) False LOC110515053
TU1058227 other upstream 3977 82941794 ~ 82949168 (+) False LOC110512617
TU1058230 other upstream 3977 82941814 ~ 82949168 (+) False LOC110512617
TU1058232 other upstream 19978 82927725 ~ 82933167 (+) False LOC110512617
TU1058233 other upstream 21284 82927725 ~ 82931861 (+) False LOC110512617
TU1058236 other upstream 33915 82915796 ~ 82919230 (+) False LOC110512617
TU1058295 other downstream 78781 83035112 ~ 83035491 (+) True G929370
TU1059640 other downstream 630257 83586588 ~ 83639961 (+) False LOC110512947
TU1059643 other downstream 630257 83586588 ~ 83598616 (+) False LOC110512947
TU1059635 other downstream 633177 83589508 ~ 83639961 (+) False LOC110512947
TU1059638 other downstream 633177 83589508 ~ 83639961 (+) False LOC110512947

Expression Profile