RNA id: XR_005034292.1


Basic Information

Item Value
RNA id XR_005034292.1
length 2282
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC110512947
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 83586588 ~ 83639961 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTGTTAATAGATTTTTCGCTCACACCAGATGTCTGGACCCTGGACAGATAACAGaaggagagagggacccTAGGAGGTACGTAAAGGAGTTGATGAAATCCTGTTACGACAGACAAATCAGATAAGTCAGTCTGTGTGGAGGAGGATGAAGACCTAGTGACGTGCAGGACAGAGTAAAACACACACTATCAATGACATGCAGCTTTTCTCATAGACCGGGGAGGTTACTATGTGAAGGAATGTGTTAGGATTGGAAGTTCTCTCTTTATGTTTCTTTTGAGATGGTATGGCCTCTGAGAACCCCCAAGACCAACTGCATGAGGCTATTAAAAACGCACAACGCCTTGCTGAGGAGCTCAACCAAGAGAAGGACCCACAAGCCCAACTGGACGAGGCCATTAACGAGGTCAAAAGACTGGCTGAGGAGCTCAACCAAGAGAAGGACCCACAAGCCCAACTGGACGAGGCCATTAACGAGGCAAAAAGACTGGCTGAGGAGCTCAACCCAGAACGGGAAAATAAGAAGAAAAAGACAAACAAGCCTCCAGGGATTAGGTTCAGATGGAGACAAAGGGATGAGAGAGGACAGATTGTTCCTCAAACCAGGAAGGCAAGTTTCATCCCATCTAGGTGCTCAACACGTATAAGTTTATATTATATATTCATATTTATGTCATGTAAAGTCTCCATACACTTCATGTAAGTATTCAGCCCATATAATATGATTTTCTGGTAAAAAatagatttatattttatttcaggatTTGATTGAGTGATGTTTTGCAGTGATACCAGGAGAGGGCAGTGTGACAACAACCAGGTTTGGCAGGAGGACACTAGGACGGTCATTTCTCTGTTGTTGTGGTAACATGATAGGGTGGGTTGTTGGTTAGGAATAGATAACAGAGCCACGGTTGGACACTTCAGAATACAGCCATGGTTGGAGGAGTCAGCCGGGAGTGGATAGCTGTATCGGCCACTGTTGGATAGCTCAGCCGTAGCTGCATACTAGTCATGTTCGGAAAATAGAGGCGTGGTGGAATGTACCATTCAGCTATGATTGGATAGCTATGGTAGCTCCGCCCCGTTCATAGTCCCAGACCCAAAACGCTCTCAGTCTGTCAGCGACCGTGCAAGAGTGAACATCTCCCATGACTGTTATTTCTAAACTTGTCAAAGCTTGAAATCTTTCACTCATTTCCATCCCAGCCCGAAACCGTATCTGCAGAACAGCACTTTTTTTAGGAGCTTTGATATTCTTATATTGTTACGGTACTTTTTGATACTGTTTGTAAGTATCCATGTTATGCACTGAATTTGTAATTGTATTTGAAtgtgaaattaaaataaaaattatttttcaaaaaaatatgtaaaaaaatctATGTATGCTTATGTGTACAACGTGGTGCTTTGTTGAATAAAACGGAAACAAACCAACCAGAATATAGTCATGTCTTTAATTTCACATTTCAATATTATATCACCTCGTTCATGGAGGTAATAGACATTTAGGGAGGCAGAGTATGACAGTGTGAAAACGtaacaatgtaaaacaaaaaaagaacAAGTTTAATGTGTACTCAATTTCCAGGGGCTTCCTCTACGCGAAGCAGAGCCGTCCTGAGCCTCCACTACAGGAACTCAGTGCCAGAGTGAACTTCTCCCCTGGCTACTATTTCAAAGTTGTCAAAGCTTCAAGTCGTTTGACTCATTTCGATCTAAGCCCGAAACTGAGAAGTGCCAGGGGCTTTCCCTACATGAATTTGGCGCCTCTCCAGCTCTCGAGATTCATTGTTGGTTAGGAATAGATAACAGAGCCACGGTTGGACACTTCAGAATACAGCCATGGTTGGAGGAGTCAGCCGGGAGTGGATATCTGTATCGGCCACTGTTGGATGGATCAGCCGTAGCTGCATACTAGAGTCATGTTCGGAAAATAGAGGCGTGACATACCAGTCAGCTCTGATTGGTAGCTCCGCCCCGTTCATAGTCCCAGACCCAAAACACTCTGTCTGTCAGCGACCGTGCAAGAGTGAACATCTCCCGTGACTGTTATTTCTAAACTTGTCAAAGCTTGAAATCGGTTCACTCATTTCCATCCCAGCCCGAAACCGTATCCATGTATGCTTATGTGTACAAGGTGGTGCTTTGTTGAATAAAACGGAAACAAACCAACcagaatataataataaaatgtcTTTAATTTCACATTTCAATATTATATCACACTGCATACTAGAGTCATGTtcggaaaaaataataataataaaaataaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1059658 lncRNA upstream 8447 83623980 ~ 83625115 (+) True G930352
TU1059601 lncRNA upstream 16474 83616130 ~ 83617088 (+) True G930317
TU1059637 lncRNA upstream 29433 83592774 ~ 83604129 (+) False LOC110512947
TU1059649 lncRNA upstream 31510 83595232 ~ 83602052 (+) True G930344
TU1059632 lncRNA upstream 34946 83592774 ~ 83598616 (+) False LOC110512947
TU1059627 lncRNA downstream 27613 83664353 ~ 83665246 (+) True G930339
TU1059666 lncRNA downstream 31895 83668635 ~ 83670393 (+) False G930357
TU1059665 lncRNA downstream 32626 83669366 ~ 83670393 (+) False G930357
TU1059663 lncRNA downstream 33000 83669740 ~ 83670393 (+) True G930357
TU1059597 lncRNA downstream 41674 83678414 ~ 83682799 (+) True G930313
XM_036934277.1 mRNA upstream 70575 83560090 ~ 83562987 (+) True LOC110512943
XM_036934275.1 mRNA upstream 76163 83549288 ~ 83557399 (+) False LOC118936837
XM_036934276.1 mRNA upstream 76163 83549642 ~ 83557399 (+) False LOC118936837
XR_005034287.1 mRNA upstream 490034 83141497 ~ 83143528 (+) False LOC118936836
XM_036934272.1 mRNA upstream 502533 83115501 ~ 83131029 (+) False LOC110515357
XR_005034511.1 mRNA downstream 107933 83744673 ~ 83744836 (+) True LOC118937117
LOC118937030 mRNA downstream 109919 83746659 ~ 83746784 (+) True LOC118937030
LOC118937033 mRNA downstream 111913 83748653 ~ 83748778 (+) True LOC118937033
XR_005034414.1 mRNA downstream 113907 83750647 ~ 83750810 (+) True LOC118936990
LOC118937031 mRNA downstream 115926 83752666 ~ 83752791 (+) True LOC118937031
TU1059643 other upstream 34946 83586588 ~ 83598616 (+) False LOC110512947
TU1058295 other upstream 598071 83035112 ~ 83035491 (+) True G929370
TU1058228 other upstream 677231 82953145 ~ 82956331 (+) True LOC110512617
TU1058227 other upstream 684394 82941794 ~ 82949168 (+) False LOC110512617
TU1059891 other downstream 256854 83893594 ~ 83946627 (+) True LOC110518749
TU1059888 other downstream 357933 83994673 ~ 83999903 (+) False LOC110516172
TU1059899 other downstream 364083 84000823 ~ 84009431 (+) True LOC110516172
TU1059971 other downstream 499833 84136573 ~ 84145674 (+) False LOC110515513
TU1059979 other downstream 518199 84154939 ~ 84155714 (+) True G930572

Expression Profile