RNA id: XR_005034511.1


Basic Information

Item Value
RNA id XR_005034511.1
length 164
RNA type mRNA
GC content 0.56
exon number 1
gene id LOC118937117
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 83744673 ~ 83744836 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atacttacctggcaagggagacaccgtgatcacgaaggcggttcacccagggcgaggctcagccattgcactccggctgtgctgacccctgcgaatttctcaaatgtggaaatctcgattgcataatttctggtagtgggggactgcgttcgcgctctcccctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1059801 lncRNA upstream 4759 83739627 ~ 83739914 (+) True G930461
TU1059799 lncRNA upstream 5280 83739170 ~ 83739393 (+) True G930459
TU1059695 lncRNA upstream 19375 83725078 ~ 83725298 (+) True G930384
TU1059656 lncRNA upstream 21625 83690290 ~ 83723048 (+) True G930350
TU1059687 lncRNA upstream 43048 83700687 ~ 83701625 (+) True G930377
TU1059813 lncRNA downstream 2022 83746858 ~ 83759436 (+) True G930469
TU1059816 lncRNA downstream 3667 83748503 ~ 83789810 (+) True G930472
TU1059810 lncRNA downstream 73292 83818128 ~ 83830444 (+) True G930466
TU1059853 lncRNA downstream 98951 83843787 ~ 83844002 (+) True G930485
TU1059854 lncRNA downstream 99691 83844527 ~ 83848499 (+) True G930486
XR_005034292.1 mRNA upstream 107933 83633562 ~ 83636740 (+) False LOC110512947
XR_005034291.1 mRNA upstream 109314 83633562 ~ 83635359 (+) False LOC110512947
XR_005034293.1 mRNA upstream 109314 83633572 ~ 83635359 (+) False LOC110512947
XM_036934277.1 mRNA upstream 181686 83560090 ~ 83562987 (+) True LOC110512943
XM_036934275.1 mRNA upstream 187274 83549288 ~ 83557399 (+) False LOC118936837
LOC118937030 mRNA downstream 1823 83746659 ~ 83746784 (+) True LOC118937030
LOC118937033 mRNA downstream 3817 83748653 ~ 83748778 (+) True LOC118937033
XR_005034414.1 mRNA downstream 5811 83750647 ~ 83750810 (+) True LOC118936990
LOC118937031 mRNA downstream 7830 83752666 ~ 83752791 (+) True LOC118937031
XR_005034512.1 mRNA downstream 9824 83754660 ~ 83754823 (+) True LOC118937118
TU1059640 other upstream 104712 83586588 ~ 83639961 (+) False LOC110512947
TU1059635 other upstream 104712 83589508 ~ 83639961 (+) False LOC110512947
TU1059638 other upstream 104712 83589508 ~ 83639961 (+) False LOC110512947
TU1059643 other upstream 146057 83586588 ~ 83598616 (+) False LOC110512947
TU1058295 other upstream 709182 83035112 ~ 83035491 (+) True G929370
TU1059891 other downstream 148758 83893594 ~ 83946627 (+) True LOC110518749
TU1059888 other downstream 249837 83994673 ~ 83999903 (+) False LOC110516172
TU1059899 other downstream 255987 84000823 ~ 84009431 (+) True LOC110516172
TU1059971 other downstream 391737 84136573 ~ 84145674 (+) False LOC110515513
TU1059979 other downstream 410103 84154939 ~ 84155714 (+) True G930572