RNA id: XR_005034512.1


Basic Information

Item Value
RNA id XR_005034512.1
length 164
RNA type mRNA
GC content 0.56
exon number 1
gene id LOC118937118
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 83754660 ~ 83754823 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atacttacctggcaagggagacaccgtgatcacgaaggcggttcacccagggcgaggctcagccattgcactccggctgtgctgacccctgcgaatttctcaaatgtggaaatctcgattgcataatttctggtagtgggggactgcgttcgcgctctcccctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1059805 lncRNA upstream 6353 83744681 ~ 83748307 (+) False G930465
TU1059801 lncRNA upstream 14746 83739627 ~ 83739914 (+) True G930461
TU1059799 lncRNA upstream 15267 83739170 ~ 83739393 (+) True G930459
TU1059695 lncRNA upstream 29362 83725078 ~ 83725298 (+) True G930384
TU1059687 lncRNA upstream 53035 83700687 ~ 83701625 (+) True G930377
TU1059810 lncRNA downstream 63305 83818128 ~ 83830444 (+) True G930466
TU1059853 lncRNA downstream 88964 83843787 ~ 83844002 (+) True G930485
TU1059854 lncRNA downstream 89704 83844527 ~ 83848499 (+) True G930486
TU1059855 lncRNA downstream 94021 83848844 ~ 83849076 (+) True G930487
TU1059866 lncRNA downstream 115359 83870182 ~ 84086362 (+) True G930498
LOC118937031 mRNA upstream 1869 83752666 ~ 83752791 (+) True LOC118937031
XR_005034414.1 mRNA upstream 3850 83750647 ~ 83750810 (+) True LOC118936990
LOC118937033 mRNA upstream 5882 83748653 ~ 83748778 (+) True LOC118937033
LOC118937030 mRNA upstream 7876 83746659 ~ 83746784 (+) True LOC118937030
XR_005034511.1 mRNA upstream 9824 83744673 ~ 83744836 (+) True LOC118937117
XR_005034395.1 mRNA downstream 1686 83756509 ~ 83756672 (+) True LOC118936970
LOC118937015 mRNA downstream 3621 83758444 ~ 83758590 (+) True LOC118937015
LOC118937044 mRNA downstream 5539 83760362 ~ 83760473 (+) True LOC118937044
LOC118937021 mRNA downstream 7512 83762335 ~ 83762474 (+) True LOC118937021
LOC118937025 mRNA downstream 9615 83764438 ~ 83764589 (+) True LOC118937025
TU1059640 other upstream 114699 83586588 ~ 83639961 (+) False LOC110512947
TU1059635 other upstream 114699 83589508 ~ 83639961 (+) False LOC110512947
TU1059638 other upstream 114699 83589508 ~ 83639961 (+) False LOC110512947
TU1059643 other upstream 156044 83586588 ~ 83598616 (+) False LOC110512947
TU1058295 other upstream 719169 83035112 ~ 83035491 (+) True G929370
TU1059891 other downstream 138771 83893594 ~ 83946627 (+) True LOC110518749
TU1059888 other downstream 239850 83994673 ~ 83999903 (+) False LOC110516172
TU1059899 other downstream 246000 84000823 ~ 84009431 (+) True LOC110516172
TU1059971 other downstream 381750 84136573 ~ 84145674 (+) False LOC110515513
TU1059979 other downstream 400116 84154939 ~ 84155714 (+) True G930572