RNA id: XR_005034369.1


Basic Information

Item Value
RNA id XR_005034369.1
length 164
RNA type mRNA
GC content 0.56
exon number 1
gene id LOC118936944
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 83831136 ~ 83831299 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atacttacctggcaagggagacaccgtgatcacgaaggcggttcacccagggcgaggctcagccattgcactccggctgtgctgacccctgcgaatttctcaaatgtggaaatctcgattgcataatttctggtagtgggggactgcgttcgcgctctcccctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1059810 lncRNA upstream 692 83818128 ~ 83830444 (+) True G930466
TU1059816 lncRNA upstream 41326 83748503 ~ 83789810 (+) True G930472
TU1059813 lncRNA upstream 71700 83746858 ~ 83759436 (+) True G930469
TU1059807 lncRNA upstream 74466 83744681 ~ 83756670 (+) True G930465
TU1059805 lncRNA upstream 82829 83744681 ~ 83748307 (+) False G930465
TU1059853 lncRNA downstream 12488 83843787 ~ 83844002 (+) True G930485
TU1059854 lncRNA downstream 13228 83844527 ~ 83848499 (+) True G930486
TU1059855 lncRNA downstream 17545 83848844 ~ 83849076 (+) True G930487
TU1059866 lncRNA downstream 38883 83870182 ~ 84086362 (+) True G930498
TU1059868 lncRNA downstream 47799 83879098 ~ 83950072 (+) False G930500
XR_005034368.1 mRNA upstream 1789 83829184 ~ 83829347 (+) True LOC118936943
XR_005034384.1 mRNA upstream 3823 83827150 ~ 83827313 (+) True LOC118936958
XR_005034522.1 mRNA upstream 5775 83825198 ~ 83825361 (+) True LOC118937128
XR_005034383.1 mRNA upstream 7809 83823164 ~ 83823327 (+) True LOC118936957
XR_005034521.1 mRNA upstream 9761 83821212 ~ 83821375 (+) True LOC118937127
XR_005034380.1 mRNA downstream 1789 83833088 ~ 83833251 (+) True LOC118936954
LOC118937032 mRNA downstream 4817 83836116 ~ 83836259 (+) True LOC118937032
XM_036934289.1 mRNA downstream 62231 83893530 ~ 83968769 (+) False LOC110518749
XM_036934291.1 mRNA downstream 62231 83893530 ~ 83968769 (+) False LOC110518749
XM_036934290.1 mRNA downstream 62231 83893530 ~ 83968790 (+) False LOC110518749
TU1059640 other upstream 191175 83586588 ~ 83639961 (+) False LOC110512947
TU1059635 other upstream 191175 83589508 ~ 83639961 (+) False LOC110512947
TU1059638 other upstream 191175 83589508 ~ 83639961 (+) False LOC110512947
TU1059643 other upstream 232520 83586588 ~ 83598616 (+) False LOC110512947
TU1058295 other upstream 795645 83035112 ~ 83035491 (+) True G929370
TU1059891 other downstream 62295 83893594 ~ 83946627 (+) True LOC110518749
TU1059888 other downstream 163374 83994673 ~ 83999903 (+) False LOC110516172
TU1059899 other downstream 169524 84000823 ~ 84009431 (+) True LOC110516172
TU1059971 other downstream 305274 84136573 ~ 84145674 (+) False LOC110515513
TU1059979 other downstream 323640 84154939 ~ 84155714 (+) True G930572