RNA id: XR_005034300.1


Basic Information

Item Value
RNA id XR_005034300.1
length 2610
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC118936845
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 84115817 ~ 84118470 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCAAATCGTTGATTCGATCGATTTGGTTGATTTCGTTTCGATGTATTTCTATGGTAACTGTCGCCCGGGGCCCGACGATAGAGGGCGCGTTTCTATGGTAACTGTCGCCCGGGGCCCGACGATAGAGGGCGCGTTTCTATGGTAACTGTCGCCCGGGGGCCCGACGATAGAGGACGCGTTTCTATGGTAACTGTCGCCCGGGGGCCCGACGATAGAGGACGCGTTTCTATGGTAACTGTCGCCCGGGGACCGACGATAAGAGGATGAGGAGCAACACAGACCATCCAAAGGGGAACCTTGTAACCATAGCGACCAACGGCAATCTTTGACACATCAACAGGTTGGGGAATTAGTCCTTCAGTtgtggctgttttttttttaaatcagagctttaaaatggctccctattctctatgtagtgcacttcttttgacaggGGTCCATAGGGtcgtagtgcacttcttttgacaggGGTCCATAGGGtcgtagtgcacttcttttaacAGGGGTCCATAGGGTTGTAGTGCACtgcaaagggaatagggtgctatttcaggATACACTCAGAAAGACCGGGCCCTTGGTCATCAGTAGAGTTAGCCATCCTTATCCCAGCCAGAATGGCCCgtagtccaaagtagtgcactataaagggaacagggagccATTTTGGGACGGCATTGTTGTGATGTATCAGATGTGACtgtagtccagtccagtccagaccGTGTAGAATTCACCTAATACATCGGGATTAAGCCCCTTGTTGCTGTTTCTAAGGTTACGGGGgcgtcccaaatgacatcctatcccctatatagggtcccccccccccccccccccagtcatgtATTGGGTAATACACCAACGTTTGGGCATCACGGTTCCCTCTTCAGACCCTGAATGACTAGGGGGTTTATATAAGTCATGTTCTCTGGctgagctgtttattctctgttagtcagcacctcgaCACTAAGTCATGTTCTCTGGctgagctgtttattctctgatAGTCAGCACCTCAACACTAAGTCATGTTCTCTGGgtgagctgtttattctctgatAGTCAGCACCTCGACACTAAGTTTTATCTGGGTCTATATTTTAAACAACTAGAGACAGACTGAATGAGTTTTATCTGGGTCTATATCTCAACTAGAGACAGACTGAATGAGTTTTATCTGATGTCAGAGATACTGTAGAACAATCAATAAACCAAGTCAATTAGGGTTTTCAGACGTTAAAAACAGGTTTCTGATTTAGTGTTAACTTGCTAACTATTTAAAGAGAACATTCAGTCTCTAGTTGAGATATAGACCCAGATAAAACTCATTCAGTCTGTCTCTAGTTGAGATATAGACCCAGATAAAACTCATTCAGTCTGTCTCTAGTTGAGATATAGACCCAGATAAAACTCATTCAGTCTGTCTCTAGTTGTTTAAGATATAGACCCAGATAAAACTCATTCAGTCTGTCTCTAGTTGAGATATAGACCCAGATAAAACTCATTCAGTCTGTCTCTAGTTAAGATATGGACCCAGATAAAACTCATTCAGTCTGTCTCTAGTTAAGATATGGACCCAGATAAAACTCATTCAGTCTGTCTCTAGTTAAGATATGGACCCAGATAAAACTAATTCAGTCTGTCTCTAGTTGTTTAAGATATGGACCCAGATAAAACTCATTCAGTCTGTCTCTAGTTGTTTAAGATATGGACCCAGATAAAACTCATTCAGTCTGTCTCTAGTTGTTTAAGATATGGACCCAGATAAAACTCATTCAGTCTGTCTCTAGTTGTTTAAGATATAGACCCAGATAAAACTCATTCAGTCTGTCTCTAGTTAAGATATAGACCCAGATAAAACTCATTCAGTCTGTCTCTAGTTAAGATATGGACCCAGATAAAACTCATTCAGTCTGTCTCTAGTTGAGATATAGACCCAGATAAAACTCATTCAGTCTGTCTCTAGTTAAGATATGGACCCAGAGGTCGACTGATGTTTAGCACAGCTCTCGTTGAGAGacttttttaaaatccatttttagGTTAAAAGCTAAACTGACCCAAGTTCAGTGTCTTTGGGTGTCTTCAGTGGTCGCTAACCCTGGTCTAGAagggctgcagtgtgtgtgtgtgtgtgtgtgtgtgtgcaggcttttAACACACATCATTCAGCTAACCAAGGTCTTGATGATTGTGATTAAACATAAAagcaggtgtgttagtgctgggctggaacagggGACCAGGGTTGGCCAGCCTTGTCCTACAACATGGTCTGAACAGAAGCACATGTGATGTGAGATTCTTCTTCCCCAGGAGGTTTTCACTGATCATCGGGAGGCTATGATAGAATCGGAACTCTCGTTCTATGCACAGAATTAGAATTCTGTTGGTGAGAGTTCCGTTCACTCCATTCTGGAAGCCTCTGCTGCTACACAACCCggttgtgttctgttctgtcacacttctctttctctctcttgtctgcAAGATTATACTGTTCATTCAAATATTGAATTTAAAAAGGCAATATTTTAACTTGATCAATTACCGGAGATGATATGATGTAGAAATTAATAAAAGTATTTAAACATGTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1059885 lncRNA upstream 1337 84114229 ~ 84114480 (+) True G930508
TU1059866 lncRNA upstream 29455 83870182 ~ 84086362 (+) True G930498
TU1059955 lncRNA upstream 46862 84066556 ~ 84068955 (+) True G930550
TU1059946 lncRNA upstream 87398 84025128 ~ 84028419 (+) True G930543
TU1059937 lncRNA upstream 127967 83986051 ~ 83987850 (+) True G930536
TU1059966 lncRNA downstream 7337 84125807 ~ 84126206 (+) True G930561
TU1059981 lncRNA downstream 34199 84152669 ~ 84153470 (+) False LOC118936846
TU1059982 lncRNA downstream 34199 84152669 ~ 84154174 (+) True LOC118936846
TU1059985 lncRNA downstream 38305 84156775 ~ 84156982 (+) True G930577
TU1059996 lncRNA downstream 64494 84182964 ~ 84183346 (+) True G930586
XM_036934297.1 mRNA upstream 3621 83981478 ~ 84112196 (+) False LOC110516172
XM_036934295.1 mRNA upstream 3621 84010517 ~ 84112196 (+) False LOC110516172
XM_036934296.1 mRNA upstream 3680 84010517 ~ 84112137 (+) False LOC110516172
XR_005034487.1 mRNA upstream 65959 84049729 ~ 84049858 (+) True LOC118937093
XM_036934290.1 mRNA upstream 147027 83893530 ~ 83968790 (+) False LOC110518749
XM_036934299.1 mRNA downstream 11967 84130437 ~ 84282587 (+) False LOC110515513
XM_036934300.1 mRNA downstream 12871 84131341 ~ 84280907 (+) False LOC110515513
XM_036934298.1 mRNA downstream 12871 84131341 ~ 84282587 (+) False LOC110515513
XR_005034301.1 mRNA downstream 12871 84131341 ~ 84282587 (+) False LOC110515513
XM_036934301.1 mRNA downstream 29442 84147912 ~ 84151522 (+) False LOC118936846
TU1059899 other upstream 106386 84000823 ~ 84009431 (+) True LOC110516172
TU1059888 other upstream 115914 83994673 ~ 83999903 (+) False LOC110516172
TU1059891 other upstream 169190 83893594 ~ 83946627 (+) True LOC110518749
TU1059635 other upstream 475856 83589508 ~ 83639961 (+) False LOC110512947
TU1059971 other downstream 18103 84136573 ~ 84145674 (+) False LOC110515513
TU1059979 other downstream 36469 84154939 ~ 84155714 (+) True G930572
TU1060738 other downstream 558089 84676559 ~ 84677078 (+) True G931108
TU1061026 other downstream 1024850 85143320 ~ 85149746 (+) True LOC110517086
TU1061067 other downstream 1079545 85198015 ~ 85202541 (+) False LOC110515429

Expression Profile