RNA id: XR_005034302.1


Basic Information

Item Value
RNA id XR_005034302.1
length 2468
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC118936846
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 84147912 ~ 84154174 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCAAACCATACCTTATTGATTCAATATGGACACCTGTTCTGCTCTGcttccttctcgctctcttttttaCAGTCTTGATTATGTGGGTTTTATCTGCGCCAAACTTGGTGCAAAACCACGCCCACGAGTAGCCGAGCAAAAAGCCGCGCTGATTGGACAGCTTGTTCTGACGTTCCTCTTCAGGAAGTAAACGCGACATTTTCGGGTTTGCTATATAAGCTGGTATCAAAATAAGAAAAGTAACTCCTAGCGACATCAACAGACTGCCAAGCGTTATTGATTTACCTCGCAGCCAGTGGACTGACGATTGTCGACACTGCTGGACATATTTTCAAGCtattagctagcaagtttacatttgcaagtagctagctagctagtcgaGTGTGCTGCTGTGTTGAGACGGACAACCATCATCAACGGTATTGCTAACTAACGTTAATCTCAACTAAAGAGCTTTCCCCGTTGTCACGTGCGCTACCGTCGCTGCTCCAATATGCCTCGCGAGTGCGCTGTTAAAACGTGCGACAACAAGCAAAAGACTTGGTCGGCTCTAATGTTTCACCGACTTCCACTGAGTCATCCGGACCGATTGAAACTGTGGCTGATTGCTCTGAACAAAGATGCTAATACCGCGACCGATGACCTCAGAAAGTTACTCGTTTGCTCGGAACATTTTCTACCGGGGGACTATTACGAGAAGCTGGGACAGGACAGACACAGCAGGATGAGAATCATGAAAAGTTTCCTGAAGGATACAGCGGTGCCGTCGGTGGCCGTTCACGCGCCAGGACAACGTGGAATAATATCGgTTGAGACGGGAGACGTACCTCCAGGGACTGACTCCCTGTCTGCTGGAGGGGCATCTAGTCCCACCCCACAACGTGGAGGGTCAGGTGTTGCTACGGCTACGACGGGGTTCCTCTCCCACCGGGGTCTGCAGCTGACAGAGCCTGCTTCAACCTCTGGGGCGTACGTGGCTCTGGCTCACACGTGTTCACTTAGTAAGGTAATGCTGTTATTATCATGGGGCTCTACACTTAGTAAGGTAATGCTGTTATTATCATGGGGCTCTACACTTAGTAAGGTAATGCTGTTATTATCATGGGGCTGTACACTTAGTAAGGTATTGCTGTTATTATCATGGGGCTATACTAGCTGTACACTTAGTAAGGTAATGCTGTTATTATCATGGGGCTCTACACTTAGTAAGGTAATGCTGTTATTATCATGGGGCTATACTAGCTGTACACTTAGTAAGGTAATGCTGTTATTATCATGGGGCTGTACACTTAGTAAGGTAATGCTGTTATTATCATGGGGCTATACTAGCTGTACACTTAGTAAGGTAATGCTGTTATTATCATGGGGCTCTACACTTAGTAAGGTAATGCTGTTATTATCATGGGGCTATACTAGCTGTACACTTAGTAAGGTAATGCTGTTATTATCATGGGGCTCTACACTTAGTAAGGTAATGCTGTTATTATCATGGGGCTATACTAGCTGTACACTTAGTAAGGTAATGCTGTTATTATCATGGGGCTATACTAGCTGTACACTTAGTAAGGTAATGCTGTTATTATCATGGGGCTCTACACTTAGTAAGGTAATGCTGTTATTATCATGAGGCTCTACACTTAGTGAGGTAATGCTGTTATTATCATGGGTCTCTACTAGCTGTACACTTAGTAAGGTAATGCTGTTATTATCATGAGGCTCTACACTTAGTAAGGTAATGCTGTTATTATCATGGGGCTCTACGCTTAGTAAGGTAATGCTGTTATTATCATGGGGCTGTACACTTAGTGAGGTAATGCTGTTATTATCATGGGGCTCTACACTTAGTAAGGTAATGCTGTTATTATCATGGGGCTCTACACTTAGTAAGGTAATGCTGTCATTATCACGGGGCTGTACACTTAGTAAGGTAATGCTGTTATTATCATGGGGCTCTACACTTAGTAAGGTAATGCTGTTATTATCATGGGGCTGTACACTTAGTAAGGTAATGCTGTTATTATCATGGGGCTGTACACTTAGTAAGGTAATGCTGTTATTATCATGGGGCTGTATACTTAGTAAGGTAATGCTGTTATTATCATGGGGCTGTATACTTAGTAAGGTAATGCTGTTATTATCATGGGTCTCTACTAGCTGTACACTTAGTAAGGTAATGCTGTTATTATCATGGGGCTCTACACTTAGTGAGGTAATGCTGTTATCATCATGGGGCTCTACACTTAGTAAGGTCATGAATGCTGTTATCATCATGGGGCTCTACTGGCTGTGGATGGATAGTATGGAAGTACTTGGCTTGTGGGAGCTGGAATGGCTCATAGGAGCaggagtctatctcctgtttctgtagtgagacagcttgatgtacagaacaccccctggacaggacactcactagtgtatctcctgtttctgtagtgagacagcttgatgtacggtacacccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1059966 lncRNA upstream 21706 84125807 ~ 84126206 (+) True G930561
TU1059887 lncRNA upstream 29455 84117054 ~ 84118457 (+) True LOC118936845
TU1059885 lncRNA upstream 33432 84114229 ~ 84114480 (+) True G930508
TU1059955 lncRNA upstream 78957 84066556 ~ 84068955 (+) True G930550
TU1059946 lncRNA upstream 119493 84025128 ~ 84028419 (+) True G930543
TU1059981 lncRNA downstream 1147 84152669 ~ 84153470 (+) False LOC118936846
TU1059982 lncRNA downstream 1147 84152669 ~ 84154174 (+) True LOC118936846
TU1059985 lncRNA downstream 5253 84156775 ~ 84156982 (+) True G930577
TU1059996 lncRNA downstream 31442 84182964 ~ 84183346 (+) True G930586
TU1059997 lncRNA downstream 32121 84183643 ~ 84184846 (+) True G930587
XR_005034300.1 mRNA upstream 29442 84115817 ~ 84118470 (+) False LOC118936845
XM_036934297.1 mRNA upstream 35716 83981478 ~ 84112196 (+) False LOC110516172
XM_036934303.1 mRNA downstream 135856 84287378 ~ 84347895 (+) False LOC110514511
XM_036934305.1 mRNA downstream 135856 84287378 ~ 84347895 (+) False LOC110514511
XM_036934306.1 mRNA downstream 135856 84287378 ~ 84347895 (+) False LOC110514511
XM_036934307.1 mRNA downstream 135856 84287378 ~ 84347895 (+) False LOC110514511
XM_036934308.1 mRNA downstream 135856 84287378 ~ 84347895 (+) False LOC110514511
TU1059971 other upstream 2238 84136573 ~ 84145674 (+) False LOC110515513
TU1059899 other upstream 138481 84000823 ~ 84009431 (+) True LOC110516172
TU1059888 other upstream 148009 83994673 ~ 83999903 (+) False LOC110516172
TU1059891 other upstream 201285 83893594 ~ 83946627 (+) True LOC110518749
TU1059638 other upstream 507951 83589508 ~ 83639961 (+) False LOC110512947
TU1059979 other downstream 3417 84154939 ~ 84155714 (+) True G930572
TU1060738 other downstream 525037 84676559 ~ 84677078 (+) True G931108
TU1061026 other downstream 991798 85143320 ~ 85149746 (+) True LOC110517086
TU1061067 other downstream 1046493 85198015 ~ 85202541 (+) False LOC110515429
TU1061267 other downstream 1181034 85332556 ~ 85335821 (+) False LOC110515949

Expression Profile