RNA id: XM_036934328.1


Basic Information

Item Value
RNA id XM_036934328.1
length 7401
RNA type mRNA
GC content 0.54
exon number 48
gene id LOC110515949
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 85236443 ~ 85448659 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctcctctctctctctctcctctctctcaaacacGCAGATTCACGCACAGAGAGGCTGTAGTAGGCTAGGAAGACAACACTCGTGCGCACTTCTGAAAGGGGGAACACTCGTTCCGCCCCTCAGTAACGCTTTCCTTGTCTTATAGACACTTAGATTTTttaactgaagaaaaaaaaaacaacgcTGCCGCAGTATCATGACGAACCGGGGCATCCCCGAGCCCTGTGGATTTTGAGGCCGACCGAAGCCCCATCTCGCACGGTCAAGAAGACCTTGCCTCTCCATCCCGGTGGTCGGGGGAGACGGAACGTCAAGGAGCACCAGGAGAAACACATAGCTACGCCAGAGACACCGGACCGCGACCGAGACAGAACGACGGAAAATGGCTTCGTCAAGTAGCACGTCCCCGGAAGGAGGGACACCGCCGCACAAGAACCGCATTCGGCAGtctgacaGTAACACTAGTTTCCTGCGTGCTGCGAGGGCTGGGAACCTGGACAAGGTTCTGGAGTTCCTGAAAGACGGAGTTGACATCAGTACCTGTAACCAGAATGGTCTGAATGCGCTGCACCTGGCAGCTAAGGAGGGCCATGAGGACCTGGTGGAAGAACTACTGGAGAGAGGCTCCGCCGTCGACTCTGCTACTAAGAAAGGGAACACAGCCCTCCACATCGCCTCATTGGCAGGACAGAAGGAAGTGGCTCGATTGCTGCTGAAGAGAGGAGCCGACATCAACGCCCAATCACAGAATGGCTTCACTCCTCTCTACATGGCAGCCCAGGAGAACCACCTGGAGGTTGTCAGATACCTGCTGGAGAATGGAGGCAACCAGAGCGCTGCTActgaggATGGGTTCACCCCCCTGGCCATAGCCTTGCAGCAGTGTCATAACCAGGTGGTTTCTCTCCTCCTGGAACATGACACCAAGGGCAAgGTGCGGCTGCCTGCCCTGCACATCGCTGCCCGGAAGGATGACACCAAGGCAGCTGCCCTGCTGCTGCAGAATGACCACAACGCTGACGTTCAGAGCAAGATGATGGTTAACAGAACTACAGAGAATGGGAAGAGTGGGTTTACCCCCCTGCACATCGCCGCTCACTATGGCAACGTAAATGTCTCCACCCTGCTGCTCAACCGAGGGGCCGCCATAGACTTCACCGCCAGGaatGGGATAACTCCTCTCCATGTTGCCTCTAAGAGAGGGAACACCAACATGGTAGCTCTACTGCTGGATAGAGGAGCTCAGATAGATGCCAAGACCAGGgacGGCCTCACTCCTCTACATTGTGCAGCGCGGAGTGGACATGACCCCGCCATAGAACTGCTGCTGGAGAGAGGAGCACCCATACTGGCTAGgaccaagaacggtctctcccccctccacatgTCGGCCCAGGGAGACCACGTGGAGTGCGTCAAACACCTGCTGCAGCACAAGGCGCCTGTTGATGATGTCACCCTGGACTACTTGACAGCGCTTCATGTCGCCGCCCACTGTGGTCACTACCGAGTCACCAAGCTGCTGCTGGACAAGAGGGCCAACCCCAACGTTAGGGCTCTGAATGGGTTCACTCCGCTGCACATCGCCTGCAAGAAGAACCGCGTGAAGGTGATGGAGCTGCTGGTGAAATACGGAGCCTCCGTCCAGGCCGTCACGGAGTCTGGCCTGACCCCCGTCCATGTCTCAGCCTTCATGGGTCACCTCAAcatggtgctgctgctgctgcagaacGGGGCCTCGCCGGACGTCTGCAACATCcgtggtgAGACAGCGTTACACATGGCGGCCCGTGCTGGTCAGATAGAGGTGGTTCGATGTCTCCTGAGGAACGGAGCTCTGGTCGACGCCATGGCAAGAGAGGACCAGACCCCCCTTCACATCGCGTCCCGTCTGGGGAAGGCAGAGATCGTCCAGCTGTTACTGCAGCACATGGCTCATCCCGACGCCTCCACTACTAATGGATACAGTCCTCTGCACATCGCTGCCAGGGAGGGACAGTTAGAGACCACCGCAGTGTTGTTGGAGGCTGGGGCTTCACACTCACTGGCTACCAAGAAAGGATTCACTCCTCTACATGTATCAGCCAAGTATGGAAGCCTGGAGGTGGCAAAACTCCTCCTGCAGCGCAAAGCTATGCCTGACGACGCCGGCAAGAACGGTCTGACTCCGCTGCACGTGGCAGCTCACTATGACAACCAGCAGGTGGCGCTGCTGCTGCTGGACAAAGGGGCGGCGCCCCACGCCACCGCCAAGAACGGATACACCCCACTCCACATCGCTGCCAAGAAGAACCAGACGTCCGTCGCCTCGTCTCTGCTGCAGTACGGAGCGGAGACCAACGTCCTGACCAAACAGGGGGTCACCCCTCTACACCTTGCCTCACAGGAGGGGCACAGTGATATGACCAGTCTGCTGCTGGGCAAGGGGGCACATGTCAACACTCCCACtaagagTGGTCTGACACCCCTCCACCTCACGGCCCAGGAGGACAGAGTGAATGCAGCAGAAGTTCTGGCCAAACGTGATGCTAACCTGGACCAGCAAACcaaaCTCGGCTACACTCCTCTCATTGTTGCCTGTCACTATGGAAACGTAAAGATGGTCAACTTCCTCTTGCAGCAGGGCGCCAGTGTCAACGCCAAAACCAAGAACGGTTACACTCCACTTCACCAGGCAGCAcagcagggacacacacacatcatcaacgTCCTGTTGCAACATGGAGCGACACCCAACACTACCACTGCTaatgGGAACACTGCTCTGTCCATTGCCAGGCGTCTGGGTTACATATCTGTCGTTGACACTCTGAAGGTCGTCACAGAAGAGGTCATCACCACCACAACGACTGTGACATCAGAGAAACACAAGATGAATGTTCCGGAAACCATGACGGAGATACTGGACGTGTCGGATGAGGAGGgTGAGGACACTATGACAGGGGATGGAGGGGAGTACCTGAGAGCTGAGGACCTGAGGGAGCTGGGAGACGACTCTCTACCTGGACAATACCTGGATGGATTCAACTACATGAGCCACAACCTGGACAGGTCTCATCAGACCCCTGTCCACCAGAGAGATGGAGTCCTGATTGAAGACATGATCACCAGCCACCAGGTGTCGTCTCTGTCCAGAGAGAATGAGAAGGACTCCTTCAGACTGAGCTGGGGAGCAGAGCACCTGGACAACGTAGTGCTGTCATCTAGCCTGCTGCACTCTGGcTTCCTGGTCAGTTTCATGGTGGACGCCAGGGGTGGGGCCATGCGTGGTTGCCGTCACAACGGGCTGCGCATCATCGTGCCGCCCAGGAAGTGTTCCGCTCCGACGCGGGTGACGTGCCGCCTGGTGAAGAGGCACCGCCTGGCGTCCATGCCCCccatggtggagggagaggggctggcAGGACGCATCATCGAGGTCGGCCCCACCGGGGCACAGTTCCTCGgTAAGCTCCACCTCCCCACGGCCCCGCCCCCTCTCAACGAGGGAGAGAGTCTTGTCAGCAGGATACTACAGCTGGGGCCTCCTGGCACCAAGTTCCTGGGGCCGGTGATTGTGGAGATCCCTCACTTCGCGGCCCTGCGGGGCACGGAGCGGGAGCTGGTGATTCTGAGGAGTGAGATGGGGGAGAGCTGGAGGGAACATCACTGTGAACACACTGAGGAGGAACTCAACCAAATACTGAACGGCATGGACGAGGAGCTGGACTCTCCTGAGGAGCTGGAGAAGAAGAGGATCTGCCGTATCGTCACCAGGGACTTCCCACAATACTTTGCGGTGGTGTCGCGCATCAAGCAGGACAGCCAACTGATTGGTCCTGAGGGAGCGGTGTTGAGCAGTACTCTGGTACCTCAGGTCCAGGCTGTGTTCCCAGAGGGGGCTCTCACTAAGAAGATCAGGGTTGGACTACAGgcccagccaatcagcgTAGACCTGGTGAAGAGGATTCTGGGTAACAAAGCTACTTTTAGCCCCATCGTTACCTTGGAGCCCAGGAGGCGGAAGTTCCACAAGCCAATCACCATGACGATCCCTGTCCCCAAAAGCTCGACCAATGACGGGACAGGCAACGTGTTTGGAGGGGACACGCCCACTCTGCGTCTGCTCTGCAGCATCACTGgtgggACCACTCCTGCCCAATGGGAGGACATCACTGGCTCCACCCCCCTCACCTTCATCAACCAATGTGTGTCCTTCACCACCAACGTGTCAGCGAGGTTCTGGCTGATAGACTGTCGTCAGACCCAGGAGGCTGTGAGTTTCTCTACCCAGCTGTACAGAGAGATCATCTGTGTCCCCTACATGGCCAAGTTCGTCATCTTCGCCAAGACGCTGGACCCCATCGAGGCTCGCCTCCGCTGCTTCTGCATGACGGACGACAAGATGGACAAGACGCTGGAACAGCAAGAGAACTTCACAGAGGTGGCCCGGAGTAGAGACgtagagGTACTGGAAGGGAAGCCTATCTTTGCAGACTGTTTTGGGAACCTGGTTCCTCTGACCAAGAGTGGACAGCATCACGTCTTCAGCTTCTATGCATTCAAAGAGAACCGTCTCGCACTCTTCATCAAGattCGTGACTGCGCCCAGGAGCCGTGTGGCAGACTGTCCTTCACCAAGGAGCCCCGCACCTACCGTAGTCTTACCCACAAGGCAATCTGCAACCTGAACATCACGCTGCCCACCTACTGCAAGGAGTCTGATTCAGACCTAGACGCAGATGACGAGGTAGACATGGAGgatgaagaagaagaggaagaggagcaggACAGGAaagaggagacgttggctatcgTTGCAGACCTGCTGGGGTTCAGCTGGACAGAGCTGGCGAGGGAGCTGGAGTTCAACGAGGATGAGATCCAGGAAGTGAGGACGGAGAACCCTAACTCTCTACAGGAGCAGAGCCACGCCCTGCTGCAGCGctgggctgagagagagggaaaacacgCCACCGAGGAGAGCCTGATAAAGAGGCTGACCAAGATCAACCGGATGGACATCGTCCACCTGATAGAGACCCAGATGAACAAGTCAACACAGGAGCAGACGTCCAGGACCTACGCAGAGATAGAGAAGACTCTGGACCAGAGCGAAGTTTCTGTAGCCCTGTCCTCAGTGCAGGAGGACGTAGACAGCCTCAGACTGGTGAGGAGGGTGGACTCTTCTCCCAGACCGCCCCCAGCCGTCTCAGAGGAAGACTTATCAGTGGCCTCCCTCCTGGACATTCCTTCCTGGGCGGAGCCTATGGGCCACACCCACTCAGAGAGCATGCATGGGCTATTGGAGGACCTGGAGATCACAACGGAGCTGAGCCCGTGGACTTTGGAGGACACGGTAACAAGGGAGTCCACCACCGCCAGCGAGCAACAGGGTGAGATGACAGACATCCCTCCCCAGACTGTGACAGAGGAGCAGTACACAGATCAACATGGACACGCGGTGGTCAGAAAGACTACCCGTGAGGTGAACCGCCAGGTGATGTCGAGTGAGGGGtcgcagagggaggaggggggtgactccccgggggaggagggagacggaTACTCCAGAGTGGTCGAGAGGAGGAGCCACAGAGATCTCTCAGAGGTGAGGGTGACGTTTTCTGAGCGTGACTCTGACTCAGCGTGGGGTGAGGAGGAATCAGCTGAAGGTCACGAGGTCAGCCGTGTGGAGCGGAACGCAGTGGTGGAGGGGGATTGGACCGATACGCAGCACGGTGACcccaccctgacctctgacctcccaACGTCCCGGGACGACTTCACACAGggccaAGATGTGTAAGGGACGTACCCAGAGACGGACAGTAGCGAGAGGGGAGGAGCCTGTGGTAACAGGAAACAGGTTCTCCTGGAGCACCTTCATCACCTCATCCACCTCTACTGTTagaaggtggaggaagaggaggaggaggaggaggaggggggatgaggaggaagaggggaggaaaaaAGGAATAACAGGCCTCCTTTATCGCCTCGCTAGTTTCCTGTTTGGCCTCTGACCCCGCCCCTTTTCCCTGAAGATCCACCAATCCTATGCATCAGGCACATGCAATTCCAGAGTGCACCTCAGTCCTACCACCGTCTTCCTGTTTCAACAATCTGTTTGGTCTTAACTGAttcacttattattattattatttattattttatttctttctgttttgttttcttctttgtgtgtttttttccgtttttcatttttgtttttttttgtgaccaaAGAGTTGATGTTTGTTTTCCGTATGTATTGGATCTTGACGCTGACAGACATTAGTCATATATGTGTTGTACTGCTAGAGTAGGTGGTTGGACTAACATACGCTACGATGTACACCTCACAGCACCTCACCTGTCTCTACTACTACAGTTCTTAGTTATTCTTTACTACGACGTGAAAACTACAGCACTTCCTCATGTTGacctttctttaaaaaaaaaggtcagATATCACGATGTCACCTGTAGCAACCCTTAACCGTAGTCCtcgcttcctgcttcctgcttcctgttgCTGGAGTGCTTAGTGTTCTTGTTCTACCTGTCTTCAGAATGTAGCTATATCTAAATatgtggtttaaaaaaaaaacgtttgtcATCTGTAACCTAGGCAACCTTATTAGTCCCCTCCATTACCAGGTAGAGTAGGCATGATTGGTCGGTTAGCTGGTGACGATCATAGCTGGTGACGATCATAGCTGAGATATGGTTAATTATATATAGCCTTGatcctattttctctctctctctctctctctctctctctctctcgctctctcgctctctctctctctctctctctctctctctctctcgctctctctctctctctctctctctcctctgtttctatcTTTCTTCTCGTCTTTTAAACTCTCTCCATGGTTTGTAACATTTCCAACCTCATCTCATTGTTTGACGTGCGTGCATGTGAATtagtgcaagtgtgtgtgtgtgatgtcagaCCTGAATTGCTGCTATGAAGGGAGTGGTTTGGTAAAAGCAGCAGTCTTCTCTGTTCAATTCtttccttgttttttttaaagttctTCTTCTGTAGTTTCTGGTTCAGTTCACTATCTAGATCAGGAActcgtttttttttttggtttgtttgaTTTGTTATGGAGACTTGACGTTTCCTTTAttaggattttatttatttaatatttattttccCAATGGTGAATACGCTGTGTATAAGTTGATAAGGTGTGGATCATGACTGTCTCGTTTAGAAGCAGTCCTCTGATATGAAGATGTCTGTGTCacgaatggcatcctattccctatgcagaagccagagggccctggtctatagtagtgtactatatagggaatagggctctggtcctatagtagtgtactatatagggaatagggctctggtctat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1061098 lncRNA upstream 6570 85229485 ~ 85229873 (+) True G931351
TU1061094 lncRNA upstream 9653 85225390 ~ 85226790 (+) True G931347
TU1061070 lncRNA upstream 14691 85218856 ~ 85221752 (+) True LOC110515429
TU1061057 lncRNA upstream 47772 85181842 ~ 85188671 (+) True G931335
TU1061054 lncRNA upstream 57236 85178347 ~ 85179207 (+) True G931333
TU1061260 lncRNA downstream 1871 85450530 ~ 85451295 (+) False G931436
TU1061261 lncRNA downstream 1871 85450530 ~ 85451295 (+) True G931436
TU1061443 lncRNA downstream 5248 85453907 ~ 85455663 (+) False G931568
TU1061444 lncRNA downstream 5248 85453907 ~ 85455663 (+) True G931568
TU1061445 lncRNA downstream 6099 85454758 ~ 85455243 (+) True G931569
XM_036934324.1 mRNA upstream 18700 85198005 ~ 85217743 (+) False LOC110515429
XM_036934323.1 mRNA upstream 86667 85105137 ~ 85149776 (+) False LOC110517086
XM_021594834.2 mRNA upstream 389637 84843968 ~ 84846806 (+) False LOC110516354
XM_021575212.2 mRNA upstream 395347 84835276 ~ 84841096 (+) True LOC110498551
XM_036934593.1 mRNA upstream 576065 84654783 ~ 84660378 (+) True LOC110514534
trnae-cuc-167 mRNA downstream 7765 85456424 ~ 85456495 (+) True trnae-cuc-167
XR_005034307.1 mRNA downstream 17517 85466176 ~ 85466981 (+) False LOC118936854
XM_036934330.1 mRNA downstream 23504 85472163 ~ 85525385 (+) False LOC110513232
XM_036934329.1 mRNA downstream 23505 85472164 ~ 85525385 (+) False LOC110513232
XR_005034308.1 mRNA downstream 23505 85472164 ~ 85594820 (+) False LOC110513232
TU1061067 other upstream 33902 85198015 ~ 85202541 (+) False LOC110515429
TU1061026 other upstream 86697 85143320 ~ 85149746 (+) True LOC110517086
TU1060738 other upstream 559365 84676559 ~ 84677078 (+) True G931108
TU1059979 other upstream 1080729 84154939 ~ 84155714 (+) True G930572
TU1059971 other upstream 1090769 84136573 ~ 84145674 (+) False LOC110515513
TU1061508 other downstream 25627 85474286 ~ 85475128 (+) True G931587
TU1061509 other downstream 26962 85475621 ~ 85476131 (+) True G931588
TU1061451 other downstream 53489 85502148 ~ 85504880 (+) True LOC110513232
TU1061456 other downstream 67939 85516598 ~ 85519844 (+) False G931574
TU1061447 other downstream 75297 85523956 ~ 85525041 (+) False G931571

Expression Profile