RNA id: XM_036934330.1


Basic Information

Item Value
RNA id XM_036934330.1
length 6951
RNA type mRNA
GC content 0.49
exon number 23
gene id LOC110513232
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 85472163 ~ 85594820 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTAATAGCGCTGTCCCTTTACAACAACACAAATAGTTtttgtaattttgtccttgaaacatttaattgaaatactgtagaattccattcattcctatgaaGGACTGTTCCTACCGGGGAGTGGCAATATGGCCGACTAGTGGCTTCACAGCCTCTCAAGGGCCAATGCATATCACCAACAACCCAGGGTTTATATACAGCTTTGAGTCACCTAGTAATTTGAAAGTgaaagtaaaaagtacatatggTGCTGCCATTTTGAAACAACTGCGCCATGAAGGTTATTTCTATGGACGTGTTTTAAGGACGACGTaacgttggcaaaaaaaagtCCTAGGCGAGGCGGTGGGCTGCGGACTATAATGAATCAAGATAGTTCAGGAGAACAATCTGGCTTTCTGTGAAATATGCTGAGCAACAGTAAACTGCCTTGGATTTTCATCCGCCGTCATTTCTGAGAAGGAGCCGATGGAAATCACTTTACGTCTATGGGGAGAGTGAAGTAAATATGGAGGAAGACAGTAGTAATCAGGAGAGGGTGGGGTCACCGTGTCTATCCATGAAGAGTGATCGTTCCATGGACAGGCCCATTATGTTTGGAAAAGATGCCAGTGGTAATCAGGAGAGGGTGGGGTCTCCGTGTCTGTCCATGAAGAGTGATTGGTCCATGGACAGGCCCATTTTTTTGGGAAAAGATGCCAGTGGTAATCAGGAGAGGGTGGGGTCTCCGTGTCTGTCCATGAAGAGTGATTGGTCCATGGACAGGCCCATTTTTTTTGGAAAAGATGCCAGTGTAAAACAGGAGAGGGTGTGGTCACCATGTCTGTCCATGAAGAGTGATTGTTCCATGGACAGGCCCATTATGTTTGGAAAAGATGCCAGTGAGCTGACAGCCTGTCTACTGACAGAGGACCACTTCAGATGTTCAGTGTGTACAGAGGTTTTCAAAGAGCCAGTCTCCATCCCCTGTGGACACAGTTACTGCAGACGGTGCATTGAGACCTACTGGAACCAGCCTGACCAGACAGGAGACTACGACTGTCCCCAGTGCAGAAAGAGATTCAGAACCCGTCCTGACCTCCTCACTAACTCAGCCTTGGAGAAGGTGATTGAGAAACTCCACCAGGCAGGGTTCAAGGTCCCTGATCTTCCCAAGCACTGCTACgctggacctggagatgtggCCTGTGATTTCTGCACTGAGAAACAGCTCAAAGCTGTGAAGTCCTGTCTGACCTGCACTGCCTCCTACTGTGAGAGACATGTCAAGCATCACTACACTGTAGCAGCTCTGCAGAGACACACCCTGGTGGAGGTGACTGGAAACCTGGAGCAGAAACTGTGCCAACTGCACCACAGAGCTCTGGAGGTCTTCTGTAAGACAGACCAGGTTTCTGTTTGTGTTCTGTGTGCCTTACAGGACCACAGGAACCACGATGTCATAAAGaatgagagagatactgtagagGAAAACACCAAAACTCAGGAGGAACAGATTGCCTCCAGGCTGGAAGCTCGACTCCAGAGAGAGATCACGATTCTACAACATAATACAGAGGAGCTTGCTACTGACAACACTGAACAGAATGTCAAGAATGCGACCATTGAGCTGAACAATCCTGCCAAGCATTTCTGCAGAAGCCTGACTGAAGACTGGACAGCAGACAGTGTTGTGGTGGCTGCCCTCGGTCGTCCCTTCGATCTTGGGATGTTGTATGACTGCCGCAGTGACTCATTTGATTCAGATGTCAGTCTTTGGGATAAAAGTACAATAGCCTTCATGCGTCATTCTCTACCTCGGCCTCTCACAGAGGTGAAGTGTATTGAAGGAGACTCCCTTCAGGACAGATTCAGGGCTCTGGATGTGACCACTCCTCTCAGAGCCAGTGTCCTGTCTGGACTGGTGGAGGTTGGAGGTGCTGCTGGATACCTGAACCATCCTGTTCAGTCCACACTGCAGGACCGGGTCACTCTACAGTACAGAACCACTACCAGACTGGACATGCTCAGTCACAGGGTGCTTCAGGAGGAAAGAGTCAGAACACAACGAAAGGCAACTCATGTGGTCATGGCTGTTCTCTATGGAGCTCAAGCGTTCTTTACCTTTGATTACAAACACATCAGCGGACAACACAGTGGTGCAGGAGAGGCAGATATACACAGTGTTGTAAAGAAGACGATCCCCACCTTCAGTGCAGATCAGATCTTTTCCAGCTTGAGTGACGATGAAAAACCAAACAGTTTGTTGTATCAGTGTACTCTCTACTGTGATTTAGACCATATCAATGGCTCCATGACGTATGACAGAGCTCTAAAAGTCTATGAAACTCTCCCGAAGCTCCTTGGACAGCAAGGAGAGGAAGCAGTGCCTCTGTACGCCTGGCTCTATCCTCTGAAGAATCTGGACAATTCTGTTGAAATTAAATTTTTCACAAAGGCAGAGGGTGTGCTGGACCATCTGAGGCAGGCCACCATGAGATGCCAGGAGATGATGACAGACTTCACCAATGGTTGTGTGATGAAATGGTTTCCTGATCTGAAGTATAAACTGTCTAGATTATCAGAGCTTCTGCAGAAGTACCAGTTGCAGTTTAAGAGAGAGCTGGCCATGGCAGTAAAGACcatgagagagagtgaaggggtggATGAAAACAGACTGAGAGACATTCTCCAGAACCATGACCAGTCACCGTTCTGTCTTCAGTCTATACAGTTGTGGCTAAACAACAAGGCAGCGGAGgtgaagtctctgaatgtctgtaAAACAAGAAACATCCCCATAATGAAATCTCAGGAAGAGCTGGACGCTGTCCTCAGATCATCAAAGGACAGGCTGCTGTGTTTCACTCTGACCTCCCTGGAGGATGAAGATCCATTCCTCTCCACCATGGAGCAGCACAAACACTCTGTTCCAATGAACACTGTGAACCAATCTGATCTCACTGGACAGCAGCACAAACACTCTGTTCCAATGAACACTGTGAACCAATCTGATCTCACTGGACAGCAGGAGACACAGCGACCATTCAAACCTCCCGATTTAACTCAGAAAATACAGTCTGCCCTCCGCTTGTTCACCAAATCCTATGAAGACAGCGGCGATGGAGAGAACATCAAGTTCATAGCAGCAGTTATACCAGATATCAGTGTTCCTGGATCCTCCATTCGTCTGTATCAACAAGGCAGTCTCATCACTACCAACTTCCAGCTGGGATTAAAACCTGATCCAGGCCAGGTAGCAGAGATAAAACAGAGCTGTGTCCTCCTGACGTTTCCACAGTCAACCATCAGAAGACCTGAGAGGTACAGAGTAGAGTACAGAGTCATGACTACTGGTGTTAGCAAGGTTAGCAAACGGCCATGGAATGTAGTAGACACCCTGGCTCCTGCAGAAACCTGTCTGGTGCCAGGTCTGAAACCGTTCACACTGTACCAGATCAGATACTCTGTTATAGAACACTCTGGTATGAGTGACTTTAGCAAGGTCATTGAGGTCAAGACCCTGAGATCCCCACCTGAACAGCTGTATGTGAGCCGGCTGCtgaacaaaacaaaggaaactGTCAAAGTGACTTGGTTCCAGCCTGAGTGTGAAGATGGTGCCTCTGTACTCCACTACAACGTAGACTATAAAGAGACAGGACTGGAGGGCTGGTCTACCATGGTAACAGAGGGACCTGAATGTTACTGTGATGTAACTCTGAACCTCAGTACCTgctacagagtcagagtgtcagCTGTCTATGGAGAAGGAGACACCAGTGCAaccagcagagagacagatgtcCCAGTCAATGTCTGGTATTTAGACCTCTCAGAGAATAAGGCCTCCCTCCTCCTAGAAGTGTTGAAACTCCAACCAGAGAAGAAACCAGTAGAGCTGAAGGGCTGGTCAGATGAAGAGAGTGAAGTGAGGAGTTTCCTTATGTGTCTGTCCTACATCTCACAGCTGAGGTTGTGTGTTGGTTATGGTGAAGAGAAGGCCTGGACAGTTCTGTCTAAACTCAGTGTTGCTGCAGCTGAGTTtgatacagagacaggagagaataTCTTAAAGACATTATCCTCCATGTGCAGATacacagatgatgatgatggtggtggtgttccATTTAGAGAGAGTGACTTCCTGTTGGATCTGTACTCACATGTGAAGGACTATGAGACTCAAACAGGCAGGAGTGTCCTTCCAGCATTACAGACAGTTTACCAGTCAGCTCCTGCAGTCTGGTCCATACTCCTCTCTGAGAGAAAGGCCTCCCTCCTCCTAGAGGTGCTGAAACTCCAACCAGAGAAGAAACCAGTAGAGCTGAAGGGCTGGTCAGATGAAGAGAGTGAAGTGAGGAGTTTCCTTCAGTGTCTGCCCTACATCTCACAGCTAAGTTTCCATCCACGGAGGTCTGATCCCTCAAAGCTGATCAAGTTCCTGGTGGATCTCCTGTCTCAAGCAGCAGAGTGGGAGGagcagacaggagagaagacactGAAGCTGGTATCATCAGTGTGTACTTACAGAACCTTTCCTTATCGCCATGGAGACACTTCTAAACAGAGTGATTTCCTGTTGGATCTGTTCTCACATGTGAAGGACTATGAGACTCAAACAGGCAGGAGTGTCCTTCCAGCATTACAGCCTGTTTACCAGTCAGCCAGTCCTGCTAtctggtccatagacctctcAGAGAGAAAGGCCTCCCTCCTCCTCGAAGTGCTGAAACTCCAACCAGAGAAGAAACCAGTAGAGCTGAAGGGCTGGTCAGATGAAGAGAGTGAAGTGAGGAGTTTCCTTCAGTGTCTGCCCTACATCTCACAGCTGAGCTGTGGTGATGACAGGTTTTTCCAGACTGTGTGTGAATCCATCCCTGTGAGGTCCAGAGAGGAGGACCAGCTGTTAGCCTCTCTCCTCCAGGCCTTGGGCTCCACCCTGTCACTGGGAGGAGTGTTACCCAGGAAAACCTGCAGGTCTGTGGGGAGAGTCCTGGGTCTCTGTGCCTCCAGAGTGGACCTCACTCTCACCCCCAGCAAGATCTCTCTCCAAGGAGCCGCACTTCTTTTGAGACATGAGTCAAAGCTCCACAAGCTCAGGCTGAATGTGGGTGTGGCAGTTAAACTGTCCAGACTGgttaggaggacagggagaggtgctACTCCACTGACTGTCCCAGAACTCTCCCTGGTCCTAAAGAGCAGCCAGCCACCAGAGATTGTGTTATCCAGGGCTCTGAGTAGTGTGGCGTCCCTGCTGAGATTCTGGAGGGTTCAGTGTCTGGACCTGACTGACTTATGGATCCAGGGTCACTCTCTCATCACACTGCTCTGTCACCagggacctctctctctcagACTGAATTCAGACACTCTGCAGCAGCTGACTGTAGTTGTGTATAAAGCTCAGGACAAGGACTTGACTCAGTGGTTCCTGGAGAAGGTTGGTGGAGACCTGACCTCCTGCAGGCTGGACTGGGAAGtgcttctctctctgctgcagcatTCAACACACAACATCACTGTGGACCTCAGGAAGAACCAGCTCCTAGAGAAGAACAGCTCAGATCTTCTCCCCTTTCTGGGAAGGGTTACTCTAAAGAGGTCCAGTTCCAGCTTTGTAAAGTCCTCCATCAGACAGATCTATGACAGTAGAGACAGTGACTGTGTGTCCAGTTTGTTGAGGTCTTCAGACCATTGGATCAACCTGAACAGCAGAGAGCTGGACAGAGTGGACTGTACTGCTCTGTGTTTTACCCTGCAGCACAGCCACCAAGTCAAAGTCAACCTGCTGTGGACCTCCATACCACCGGGGGAGATAGAGAGCATCCTGCCTTTtctggacagagtctcccaactCAGtgttgaCAGGAGGTTACTACTGAGTTTCCTCCAGTGCTGTGCTGCCTCTCAGATCCAGCAGGGggcaccatcatcaccaccaacagCAGTATGGCTGCTCAGGTCTCTGCAACACAGGCTGGACTTGTCCTGCTCCTCTTCTGTGGACCTGTCAGCTCAGGACCCAGGGGAGGCTCTGTGTCTGACTACTGACCACTGCAGGGCCATCAACTCTGTTCTGAAGCAGAACCAACACAGCATCCAGCTGGTTCAAAACCAGGTCCAGCTCATCCTAAGAGACTGTGAGGTGGAGGACAGAGCACTGAGGGAGCTGCTTCCCAGCCTGCATATTGTCAAGCTGAGTCCCAGCAAAGCTCTGTTACTTCAGCTGCTGGACCTTGTGTGTGAGGGGATTGAAGAGGGGCTGCTGAGGCACGCAGAGTCCCTGTGCAGAGCCCTGGATGGGGAGCTGGACCTCAGTGAGACCAGGCTGGACCAGAAGGCCTGTGGATCTCTGGCCATGGTTCTGGAACACTCAGAGGGTCTGTCAGAACTGGACCTCAGCCACTGTCAACTCACAGACCACCAGCTACAGCCCCTGATCACACACCTGCATAAAGTACAAGTCCTGGAcCTGAGCCACAATGACATCACTGATGCTCTGACTGACAGAATACTCCAACTGGTCTCTACCAACACTTCAATACACACCGTACGACTCTTCAACAACAGAATCCAGGACAGAAGACCCTTCCTGACAGACAAGAGGTTTGACATCTGGTGCAACAACATCAGGTCTTAGTTCAGGAAGAGAAGGCTGAATCCAGGACAGAAGATCCTTCCTGACAGACAAGAGGTTTGACATCTGGTGACGATAATGTTGTATAATAACAGGATAATGTGGTCAATATAGAAAGCTTTATGCTAATCATACTTGATGTTTTTGTGACATTTATAGTTTAGTTTTGATCAGATTGCTGTGAATGTGTTCTACAATTGTttgttgatgacagctttacacactcttggcattctctcaaccagcttcacctggaatgattttccaacagtcatgaaggagtttccacatatgctgagcacatgttggctgcttacacagcttgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1061493 lncRNA upstream 311 85467391 ~ 85471852 (+) False G931585
TU1061497 lncRNA upstream 311 85469251 ~ 85471852 (+) False G931585
TU1061500 lncRNA upstream 311 85469474 ~ 85471852 (+) False G931585
TU1061501 lncRNA upstream 311 85469474 ~ 85471852 (+) True G931585
TU1061504 lncRNA upstream 3573 85468293 ~ 85468590 (+) True G931586
TU1061549 lncRNA downstream 44037 85569422 ~ 85569797 (+) True G931624
TU1061554 lncRNA downstream 49917 85575302 ~ 85590375 (+) False G931627
TU1061553 lncRNA downstream 53083 85578468 ~ 85590375 (+) True G931627
TU1061459 lncRNA downstream 54286 85579671 ~ 85592174 (+) False G931574
TU1061458 lncRNA downstream 62839 85588224 ~ 85592174 (+) True G931574
XR_005034307.1 mRNA upstream 5182 85466176 ~ 85466981 (+) False LOC118936854
trnae-cuc-167 mRNA upstream 15668 85456424 ~ 85456495 (+) True trnae-cuc-167
XM_036934328.1 mRNA upstream 23504 85236443 ~ 85448659 (+) False LOC110515949
XM_036934326.1 mRNA upstream 23504 85317712 ~ 85448659 (+) False LOC110515949
XM_036934327.1 mRNA upstream 23504 85317712 ~ 85448659 (+) False LOC110515949
XM_036989416.1 mRNA downstream 38786 85564171 ~ 85594820 (+) True LOC110510945
XM_036989417.1 mRNA downstream 368469 85893854 ~ 85950607 (+) False LOC118966668
XM_036934352.1 mRNA downstream 375171 85900556 ~ 85920399 (+) False LOC118936495
XM_036934351.1 mRNA downstream 376482 85901867 ~ 85920399 (+) False LOC118936495
XM_036934336.1 mRNA downstream 403772 85929157 ~ 85945179 (+) False LOC110516966
TU1061267 other upstream 136342 85332556 ~ 85335821 (+) False LOC110515949
TU1061067 other upstream 269622 85198015 ~ 85202541 (+) False LOC110515429
TU1061026 other upstream 322417 85143320 ~ 85149746 (+) True LOC110517086
TU1060738 other upstream 795085 84676559 ~ 84677078 (+) True G931108
TU1059979 other upstream 1316449 84154939 ~ 84155714 (+) True G930572
TU1061793 other downstream 260115 85785500 ~ 85786498 (+) True G931776
TU1061788 other downstream 367709 85893094 ~ 85894737 (+) True LOC118966668
TU1061771 other downstream 376535 85901920 ~ 85902612 (+) False LOC118936495
TU1061784 other downstream 426779 85952164 ~ 85952673 (+) True LOC110528615
TU1061780 other downstream 486414 86011799 ~ 86012541 (+) True LOC110528614

Expression Profile