RNA id: TU1061778


Basic Information

Item Value
RNA id TU1061778
length 458
lncRNA type read_through
GC content 0.42
exon number 4
gene id LOC118936495
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 85900556 ~ 85920664 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTCACAGCTTCAGAtcaacagtgttggggtaccaacctaatggtagaatggatagtaacagtgttggggtaccaacctaatggtagaatggatagtaacagtgttggggtaccaacctaatggtagaatggatagtaacagtgttggggtaccaacctaatggtagaatggacagtaacagtgttggggtaccaacctaatggacagtaacagtgttggggtaccaacctaatggtagaatggacagtaacagtgttggggtaccaacctaatggtagaatggatagtaacagtgttggggtaccaacaTAATGGTAGAATGGggacagtaacagtgttggggtaccaacctaatggtagaatgggtAGTAACAGTGTTGATCCTGATCCTAGACCATTTAAATATAGTTTTTGGTTCTTAACATGGTTCCATAGTGCTCTTGTTTTGAGTTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1061770 lncRNA upstream 57 85917923 ~ 85918843 (+) False LOC118936495
TU1061768 lncRNA upstream 57 85918058 ~ 85918843 (+) False LOC118936495
TU1061848 lncRNA upstream 8590 85905328 ~ 85910310 (+) True G931820
TU1061847 lncRNA upstream 10717 85903271 ~ 85908183 (+) True G931819
TU1061843 lncRNA upstream 30446 85887755 ~ 85888454 (+) True G931816
TU1061854 lncRNA downstream 14250 85934914 ~ 85938326 (+) True G931826
TU1061855 lncRNA downstream 14956 85935620 ~ 85938812 (+) True G931827
TU1061859 lncRNA downstream 36046 85956710 ~ 86016970 (+) False G931831
TU1061862 lncRNA downstream 36046 85956710 ~ 86016970 (+) False G931831
TU1061863 lncRNA downstream 36046 85956710 ~ 86016970 (+) False G931831
XR_005034308.1 mRNA upstream 324080 85472164 ~ 85594820 (+) False LOC110513232
XM_036989416.1 mRNA upstream 324080 85564171 ~ 85594820 (+) True LOC110510945
XM_036934330.1 mRNA upstream 393515 85472163 ~ 85525385 (+) False LOC110513232
XM_036934329.1 mRNA upstream 393515 85472164 ~ 85525385 (+) False LOC110513232
XR_005034307.1 mRNA upstream 451919 85466176 ~ 85466981 (+) False LOC118936854
XM_036934336.1 mRNA downstream 8493 85929157 ~ 85945179 (+) False LOC110516966
XM_036934337.1 mRNA downstream 8493 85929157 ~ 85945179 (+) False LOC110516966
XM_036934338.1 mRNA downstream 8493 85929157 ~ 85945181 (+) False LOC110516966
XM_036934339.1 mRNA downstream 8493 85929157 ~ 85945181 (+) True LOC110516966
XM_036934355.1 mRNA downstream 30366 85951030 ~ 85957092 (+) False LOC110528615
TU1061771 other upstream 16288 85901920 ~ 85902612 (+) False LOC118936495
TU1061788 other upstream 24163 85893094 ~ 85894737 (+) True LOC118966668
TU1061793 other upstream 132402 85785500 ~ 85786498 (+) True G931776
TU1061447 other upstream 393859 85523956 ~ 85525041 (+) False G931571
TU1061456 other upstream 399056 85516598 ~ 85519844 (+) False G931574
TU1061784 other downstream 31500 85952164 ~ 85952673 (+) True LOC110528615
TU1061780 other downstream 91135 86011799 ~ 86012541 (+) True LOC110528614
TU1062162 other downstream 280534 86201198 ~ 86204184 (+) True LOC110513338
TU1062423 other downstream 522386 86443050 ~ 86475840 (+) True G932184
TU1062558 other downstream 803273 86723937 ~ 86751664 (+) True LOC110518842

Expression Profile