RNA id: XM_036934355.1


Basic Information

Item Value
RNA id XM_036934355.1
length 1241
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC110528615
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 85951030 ~ 85957092 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcaagcctggacctgagaaATGGATTCCTCAGACCTGTAAGACTTGTGACCATGTTGAGGACTCCACACACTGGCTTCAGATTGAACCCTTGACTTCCACTGTCCAGGGAGTGACAATGTTCAGACACAGGACACCCAAAGGGAGTTATGAGTGCACAGTGTCTGGGCTCCGCtggctgtgtgagagagatgtcaTTCTGAAGTATCACTTCAGGAACTGGGAACCCTACAGTCAACTTCTGAAAGACATGCAGTACACACAAGGTGGTCCATTGCTGGACATCACTATGGAGTTAGGTGAACTGGAGGAAGTTCATCTGCCACACTTTGTCTGTTTAGGGACCAACCCTTCCCTGAGGAATGAGATGAAGATTCTTCATGTAGAGGAACATGGAGTGTCTTTAGAGGAAGTGCATGAGGTCACCAGATTCCATGTTAAGATTCTCCATCCCAAGTTCTCAGCTATCTCTGTTATATGGAAATCACTGTCTCGTAAGAAAGATGTCCACTGTGACGTGGTCCTCTACATGGCAGTAAAAAAGTCAACAGTCATTTCAAGGCTGTACCTGCTCCTCAGAAACTCCAGTCAGAAAGAGGCTGTTCAGGAACGGGAGAAAAATCAGGTGTCCAAAGGATTTTCAGAATTCGTCCTGTCAAGTCCAAACGGGTCCTTAAAGCTAAACAGTTGGTTTGCGTTCAAGAATCCCCGCTCCACGTCCATCAATCCAGAGAAGATTCAGCTGTTACCTGCAGACACCACACCAAGCTGTTGCCAGATGATAATGGGAAACACAGGGGTGGACATTGAGATGGAGTTAATCGGGGATGATGAGAGGACAGTATGGAAATCAGTGTTATCAAAAGATGTGTACAGCAACGACTCTCATCCACCATCATTAACACTCCTTGGGATTCCTGCAGAGGAGTTTCTTCAGAAACACAGGGCTGAACTCATTCAGGGAGTCAAAAACCCAAAGCCAATAGCAGATGTTCTGCGGTCAAAGAGCATGATTGGTGATGAAGAGTACTCCAGAATAACATCTGAAACAACTGAACAGGAGCGAATGAGAGAACTACTGAACGCAGTTCTCCCTAAAGGACCAGAAGTGATGGGAGCTTGTCTCAAAGCTCTCAGTGAACATGAACGCCATCTTGTTAAGTACTTGAGTGAATCTAGcacctaatctgaagatgctgaggcctgtctcctagtctgtggacaaagacacttctccacctaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1061855 lncRNA upstream 12218 85935620 ~ 85938812 (+) True G931827
TU1061854 lncRNA upstream 12704 85934914 ~ 85938326 (+) True G931826
TU1061774 lncRNA upstream 30366 85918900 ~ 85920664 (+) False LOC118936495
TU1061776 lncRNA upstream 30366 85918900 ~ 85920664 (+) False LOC118936495
TU1061778 lncRNA upstream 30366 85918900 ~ 85920664 (+) False LOC118936495
TU1061865 lncRNA downstream 2618 85959710 ~ 86011112 (+) True G931832
TU1061869 lncRNA downstream 7416 85964508 ~ 86027375 (+) False G931833
TU1061870 lncRNA downstream 10327 85967419 ~ 86028427 (+) True G931833
TU1061875 lncRNA downstream 12725 85969817 ~ 86030517 (+) True G931836
TU1061878 lncRNA downstream 17211 85974303 ~ 86035060 (+) False G931837
XM_036989417.1 mRNA upstream 423 85893854 ~ 85950607 (+) False LOC118966668
XM_036934338.1 mRNA upstream 5849 85929157 ~ 85945181 (+) False LOC110516966
XM_036934339.1 mRNA upstream 5849 85929157 ~ 85945181 (+) True LOC110516966
XM_036934336.1 mRNA upstream 5851 85929157 ~ 85945179 (+) False LOC110516966
XM_036934337.1 mRNA upstream 5851 85929157 ~ 85945179 (+) False LOC110516966
XM_036989418.1 mRNA downstream 37444 85994536 ~ 86008800 (+) True LOC118966669
XM_036934356.1 mRNA downstream 51840 86008932 ~ 86017575 (+) False LOC110528614
XM_036934361.1 mRNA downstream 194911 86152003 ~ 86182526 (+) False LOC118936859
XM_036934362.1 mRNA downstream 243952 86201044 ~ 86209191 (+) False LOC110513338
XM_036934363.1 mRNA downstream 244014 86201106 ~ 86209191 (+) False LOC110513338
TU1061771 other upstream 48418 85901920 ~ 85902612 (+) False LOC118936495
TU1061788 other upstream 56293 85893094 ~ 85894737 (+) True LOC118966668
TU1061793 other upstream 164532 85785500 ~ 85786498 (+) True G931776
TU1061447 other upstream 425989 85523956 ~ 85525041 (+) False G931571
TU1061456 other upstream 431186 85516598 ~ 85519844 (+) False G931574
TU1061780 other downstream 54707 86011799 ~ 86012541 (+) True LOC110528614
TU1062162 other downstream 244106 86201198 ~ 86204184 (+) True LOC110513338
TU1062423 other downstream 485958 86443050 ~ 86475840 (+) True G932184
TU1062558 other downstream 766845 86723937 ~ 86751664 (+) True LOC110518842
TU1062664 other downstream 1040694 86997786 ~ 87019998 (+) False LOC110511479

Expression Profile