RNA id: XM_036989418.1


Basic Information

Item Value
RNA id XM_036989418.1
length 4275
RNA type mRNA
GC content 0.49
exon number 14
gene id LOC118966669
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 85994536 ~ 86008800 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCATTGTTAATGGTTCTTCAATGTTCAGACATACTGTTCTGTTATTTCTTATTGTAGCTGAGTGAGCTGTGACTTACACCTAAAacgagtctctctggggagagaaaggaggagaccactgcctctaaaatgagtctctctggggagagagaggaggagaccactgcctctaaaatgagtctctctggggagagagaggaggagaccactgcctctaaaatgagtctctctggggggagagaggaggggaccacTGCCTCTAAAATGACTCAAGACACCATTTCAAAGAGTGTCCAGAAGCCCAGAGCAGAGTCCCCTACAACCAGCCTGCTATCAATGAAGAGTGATCAGCCACCTGCTTTCAGCCAGGAACCATTGCCAGATGACAATAAGGAAGTGGAGAGTTTGGACAGTCAAACTCTGCTGACAGTCCAACAAGACATTAAGGCTAAACTGAAATACAAGTATCAACACATATCTGAAGGAATTGGACACCATGGAAACCAAAGTCTGTTCAAAGACATCTACACAGAGCTCTATATCACAGAGGGTGGAAGTGGAGGGctcaataatgaacatgaggttAGACAGATAGAGATGGCATCCAAGAAACAAACCACACAAGAGACACCAATCAAATGCAACGACATCTTCAAGCCTTTACCTGGACAAGACAAACCAATCAGAACTGTGCTGACCAAAGGAAtcgctggcattggaaaaacagtctctgtgcagaagGTCATCCTTGACTGGGCAGAGGGAAAAGCAAATCAGGACGTTCATTTCATGTTTCCTCTTCCTTTCCGTGATCTGAACCTGAAAAAGGACCAATACAGTCTGATGCAACTTCTTTCCCACTACTTCTCAGAGCTGAAAGAGATTGACAGCATTGAAGATGGTGAAACTAAAACTGTTTTCATttttgatggtctggatgagtgtCGACTTCCTCTAGACTTCAAAAACAATGAGAAGTGCTGTGATGTCACGAAGCCAACCTCAGTGGACGTGTTGCTGACAAACCTCATCGAGAGGAATCTGCTTCCCTGTGCTCTCCTCTGGATAACCTCACGGCCGGCAGCAGCCAATCAGATCCCTACTGAgtgtgttgaccaggtgacagaggtacgagggttcaatgaTCCACAGAAGGAGGAGTATTTCAGGAAGAAAATCACAGATCAGAATCTGGCCAATGAAATCATCAAGCACATGAAGACATCAAGGAGCCTCTACATCATGTGCCACATGCCAGTCTTCTGTTGGATATCAGCCACTGTCCTTGAGATGATACTGAACGAGGCAGAGAAGGATGAAGTCCCCAAAACTCTGACCCAGATGTACTCACACTTCATTCTCATCCAAATCATTGTGAAGAACAGGAAGTACAACAAAGCCACAGAGACAAACCCAAAGGAACTGTCTCAGTCAGACAAAGAGATGATCCTGAAACTGGCAAAACTGTCTTTCCAACAGCTGCAGAAGGGCAACCTGATCTTCTATGAGGAGGACCTGAGAGAGTGTGGCCTTGATGTCACAGAGGCGTCAGAGTACTCAGCAATGTGTACAGAGATCTTTAAAGAAGAATCTGGGCTGTACCAAGACAAGGTCTACAGCTTTGTGcatctgagcattcaggagtttctAGCAGCAGTGCATGCTTTAGAATCATGTCTAGACAAGAAGGAAAGTGTTTTCTCCCCCACGAGTGATGATGAAAAGAATGAGTCAATCCAGTTGTCTGACTTACACAGGAGAGCAGTGGACCAGGCCTTGAAGAGTGAGAATGGACACCTGGACCTgttcctccgcttccttctgggtctctcactggagtccaatcagaatCTGTTACGAGGCCTTCTGACACAGACAGGAAGTACAACACAGACCAATGAGGAAACAGTTAAGAGAACAGTCAGGTACCTTTCAGACAACATCAAGGAGGAATCCTCACCAGAAAGGATCATCAACTTGTTCCACTGTTTGAATGAACTTGGTGCCAACTCTCTAGTTGAAGACATGCAGACCTCCCTGCGTTCAGGAACTCTTTCAGAAACAAGACTAAAACCTGACCAATGTTCAGCCCTGGCCTACCTGTTACTGATGTcagaggaggtgctggaggagCTTGACCTGAAGACATACAACACAACAAAGGAAGGTTATCAGAGGTTGCTGCCGGTAGTGAAAACCTGCAAGAGAGCACTACTGGATCGCTGTAAACTCACGTATAAATCCTGTGAGACTCTGGCCTCAGCTCTGCAGACACCAAACTCCCCCCTGAGAGAACTGGACCTCAGCTACAATGACCTGGGAGACAGAGGAGTGGAGCTGCTCTGTGTTGGACTAACCAGTCCACTCTGCAACATACAGACACTAGTactAGCTGGCTGTAAAATCACATATGAATCCTGTGAGACTCTGGCCTCAGCTCTGCAGACAAACTTCCCCCTGAGAGAACTGGACCTCAGCTACAATGACCTGGGAGACAGAGGAGTGGAGCTGCTCTGTGTTGGACTAACCAGTCCACTCTGCAACATACAGACACTAGTactGGATCACTGTGACCTCACATATGAATCCTGTGAGACTCTGGCCTCAGCTCTGCAGACACCAAACTCCCCCCTGAGAGAACTGGAACTCAGCCACAACAATGACCTGGGAGACAGAGGAGTGGAGCTGCTCTGTGTTGGACTAACCAGTCCACTCTGCAACATACAGACACTAGTTCTAGgtcagtgtggtctgacagagGGTTGCTGTTCAGATCTGGCCTCAGTCCTGAGTTCACCCAGCTCACAACTGAAACAACTGGAGCTGAGAGACAATGACCTGCAGGACTCAGGAGTTACACTgctgtctgctggactggaggatccagactgtaaactacaCACACTGGGTCTTGgtcagtgtggtctgacagagGGTTGCTGTTCAGATCTGGCCTCAGTCCTGAGTTCACCCAACTCACAACTGAAACAACTGGAGCTGAAAGACAATGACCTGCAGGACTCAGGAGTTACACTgctgtctgctggactggaggatccagactgtaaactacaCACACTGGGtctaggtcagtgtggtctgacagagGGTTGCTGTTCTGATCTGAACTCAGTCCTGAGTTCACCCAACTCACAACTGAAACACCTGGAGCTGAGAGACAATGACCTGCAGGACTCAGGAGTTACACTgctgtctgctggactggaggatccagactgtaaactacaCACACTGGGgctgtctggctgtctggtcACAGAGGAGGGCTGTGCTGCTCTGTcttcagctctgaggtcaaacccctcccacctgaaagagctggacctgagctacaatcacccaggagTCTCTGCAGGGGGACTGCTTTCAGCTGCTCTGGTGGATCCCACATGTAAACTGATGAAGCTGAATGTGGATCATGGTGGAGAGTGCAGGCTGAAATCAGGGCCGAGGAAATATGCCTGTCATCTCACCTTGGACCCAAGTACAGCAAACCCAGACCTGATACTGTCTGAGGGGAACAGGAAGGTGACACCGGTGGTGGAGGACCAGCATTATGAAGACCATCCAGACAGATTTGACCGTTATCGCCAAGTTCTCTGCAGAGAAGGCTTATCTGATTCTCGTTATTACTGGGAGGTGGACTGGGATGGTGGTGGGCCTGCTATTGGTTTGGTGTACAAAGGAATGTTGGGAAGGGCTGGCATTTGTATTGGACTCACAAGCAATTCCTGGTGTATGTACTGCTCTGACAGCGTTACTGACTTTTACAATGCTGGAGTCCATAGTAGATCCATTCTTAGCCCTGTATCTAGCAGAGTtggagtgtatctggactggccagcTGGTACTTTGTCCTTCTATAGTGTGTCCTCCTCTGGTGCACTGACACACCTTCACACATTCTACACCACGTTCACTGAACCCCTCTATCCTGGATTTGGGTTTCTTTTGTTGAAAACCTCCTCAGTGACCCTGTATCAGATCAACGACATTCAAAGagaccatggtggagagagttggatcaagcctggacctgaggacaccagagaccatggtggagagagttggatcAAGCCTGGACTTGAGGataccagagaccatggtggagagagttggatcaagcctggacctgaggataccagagaccatggtggagagtgttgtatcaagcctggacctgaggacaccaaagaccatggtggagagagttggataccatggtggggaGAGTTGGATCAAGCCTGGACCTAa

Function

GO: NA

KEGG:

id description
K20865 NLRP12; NACHT, LRR and PYD domains-containing protein 12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1061855 lncRNA upstream 55724 85935620 ~ 85938812 (+) True G931827
TU1061854 lncRNA upstream 56210 85934914 ~ 85938326 (+) True G931826
TU1061774 lncRNA upstream 73872 85918900 ~ 85920664 (+) False LOC118936495
TU1061776 lncRNA upstream 73872 85918900 ~ 85920664 (+) False LOC118936495
TU1061778 lncRNA upstream 73872 85918900 ~ 85920664 (+) False LOC118936495
TU1061861 lncRNA downstream 7177 86015977 ~ 86016620 (+) True G931831
TU1061891 lncRNA downstream 12380 86021180 ~ 86021488 (+) True G931845
TU1061893 lncRNA downstream 12921 86021721 ~ 86023268 (+) False G931847
TU1061894 lncRNA downstream 12921 86021721 ~ 86023268 (+) True G931847
TU1061872 lncRNA downstream 16432 86025232 ~ 86030335 (+) True G931834
XM_036934355.1 mRNA upstream 37444 85951030 ~ 85957092 (+) False LOC110528615
XM_036989417.1 mRNA upstream 43929 85893854 ~ 85950607 (+) False LOC118966668
XM_036934338.1 mRNA upstream 49355 85929157 ~ 85945181 (+) False LOC110516966
XM_036934339.1 mRNA upstream 49355 85929157 ~ 85945181 (+) True LOC110516966
XM_036934336.1 mRNA upstream 49357 85929157 ~ 85945179 (+) False LOC110516966
XM_036934356.1 mRNA downstream 132 86008932 ~ 86017575 (+) False LOC110528614
XM_036934361.1 mRNA downstream 143203 86152003 ~ 86182526 (+) False LOC118936859
XM_036934362.1 mRNA downstream 192244 86201044 ~ 86209191 (+) False LOC110513338
XM_036934363.1 mRNA downstream 192306 86201106 ~ 86209191 (+) False LOC110513338
XM_036934367.1 mRNA downstream 221980 86230780 ~ 86285648 (+) True LOC110514691
TU1061784 other upstream 41863 85952164 ~ 85952673 (+) True LOC110528615
TU1061771 other upstream 91924 85901920 ~ 85902612 (+) False LOC118936495
TU1061788 other upstream 99799 85893094 ~ 85894737 (+) True LOC118966668
TU1061793 other upstream 208038 85785500 ~ 85786498 (+) True G931776
TU1061447 other upstream 469495 85523956 ~ 85525041 (+) False G931571
TU1061780 other downstream 2999 86011799 ~ 86012541 (+) True LOC110528614
TU1062162 other downstream 192398 86201198 ~ 86204184 (+) True LOC110513338
TU1062423 other downstream 434250 86443050 ~ 86475840 (+) True G932184
TU1062558 other downstream 715137 86723937 ~ 86751664 (+) True LOC110518842
TU1062664 other downstream 988986 86997786 ~ 87019998 (+) False LOC110511479

Expression Profile