RNA id: XM_036934356.1


Basic Information

Item Value
RNA id XM_036934356.1
length 1866
RNA type mRNA
GC content 0.44
exon number 10
gene id LOC110528614
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 86008932 ~ 86017575 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agcctggacctgaggacaccagagaccatggtggagagtgtTGGATtaagcctggacctgaggacaccagagaccatggtggagagtgttgtatcaagtctggacCTGAGAAATGGATTCCTCAGACCTGTAAGACTTGTGACCATGTTGAGAACTCCACACACTGGCTTCAGATTGAACCCTTGACTTCCACTGTCCAGGGAGTGACAATGTTCAGACACAGGACACCCAAAGGGAGTTATGAGTGCACAGTGTCTGGGCTCCGCtggctgtgtgagagagatgtcaTCCTGAAGTATCACTTCAGGAACTGGGAACCCTACAGTCAACTTCTGAAAGACATGCAGTACACACAAGGTGGTCCATTGCTGGACATCACTATGGAGTTAGGTGAACTGGAGGAAGTTCATCTGCCACACTTTGTCTGTTTAGGGACCAACCCTTCCCTGAGGAATGAGATGAAGATTCTTCATGTAGAGGAACATGGAGTGTCTTTAGAGGAAGTGCATGAGGTCACCAGATTCCATGTTAAGATTCTCCATCCCAAGTTCTCACCTATCTCTGTTATACTGAGATTACTGTCTTGGAACGTAGATGTCCACTGTGACGTGGTCCTCTACATGGCAGTAAAAAAGTCAACAGTCATTTCAAGGCTGTACCTGCTCCTCAGAAACTCCAGTCAGAAAGAGGCTGTTCAGGAACGGGAGAAAAATCAGGTGTCCAAAGGATTTTCAGAATTCGTCCTGTCAAGTCCAAACGGGTCCTTAAAGCTGAACAGTTGGTTTGCGTTCAAGAATCCCCGCTCCACTTCCATCAATCCAGAGAAGATTCAGCTGTTACCTGCAGACACCACACCAAGCTGTTGTCAGATGATAATGGGAAACACAGGGGTGGACATTGAGATGGAGTTAATCGGGGATGATGAGAGGACAGTATGGAAATCAGTGTTATCAAAAGATGTGTACAGCAACGACTCTCATCCAACATCATTAACACTCTCTGGGATTCCTGCTGAGGAGTTTCTGAAGAAATACAGGGCTATACTCATTCAGGGAGTCAAAAACACAATGCCAATAGCAGATGATCTGTCGTCAAAGAGCATGATTGGTGATGAAGAGTACTCCAGAATAACAGCTGAAACAACTGAACAGGAGCGAATGAGAGAACTACTGAACGCAGTCCTCCCTAAAGGACCAGAAGTGATGGGAGCTTGTCTCAAAGCTCTCAGTGAACATGAACACCATCTTGTTAAGTACTTGAGTGAATCTAGcacctaatctgaagatgctgaggcctgtcttttagtctgtggacaaagacacttctccacctaatctgaagatgctgaggcctgtctcctagtctgtggacaaagacacttcttcacctaatctgaagatgctgaggcctgtctcctagtctgtggacaaagacacttcttcacctaatctgaagatgctgaggcctgtctcctagtctgtggacaaagacacttcttcacctaatctgaagatgctgaggcctgtctcctagtctgtggacaaagacacttaAATTATTGTAATGTAAATGTTTATGTTCGTGCTATTATTTTAACAAATGTCTGTGTTttattcatgtgctgttctataaaccaatgTGTGTTCATTAAGTGGCCGACTGtacaaatcctcactatcagtagctgTAATTTGGCAGTAAGGCCAGACGTTGGTTTGAGAAGGAGAGATCTCAGTTTCAGTTTAGAGAGAAGAAGACTGGTGACGTGTTGGTCTGTCAAATgctatgaaccagtattggtcggtcacatgaatgGAACAAAATGGTAAAGAATCATGAATAAATGAtaaatataatatagtaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1061855 lncRNA upstream 70120 85935620 ~ 85938812 (+) True G931827
TU1061854 lncRNA upstream 70606 85934914 ~ 85938326 (+) True G931826
TU1061774 lncRNA upstream 88268 85918900 ~ 85920664 (+) False LOC118936495
TU1061776 lncRNA upstream 88268 85918900 ~ 85920664 (+) False LOC118936495
TU1061778 lncRNA upstream 88268 85918900 ~ 85920664 (+) False LOC118936495
TU1061891 lncRNA downstream 3605 86021180 ~ 86021488 (+) True G931845
TU1061893 lncRNA downstream 4146 86021721 ~ 86023268 (+) False G931847
TU1061894 lncRNA downstream 4146 86021721 ~ 86023268 (+) True G931847
TU1061872 lncRNA downstream 7657 86025232 ~ 86030335 (+) True G931834
TU1061874 lncRNA downstream 61568 86079143 ~ 86080223 (+) True G931835
XM_036989418.1 mRNA upstream 132 85994536 ~ 86008800 (+) True LOC118966669
XM_036934355.1 mRNA upstream 51840 85951030 ~ 85957092 (+) False LOC110528615
XM_036934338.1 mRNA upstream 63751 85929157 ~ 85945181 (+) False LOC110516966
XM_036934339.1 mRNA upstream 63751 85929157 ~ 85945181 (+) True LOC110516966
XM_036934336.1 mRNA upstream 63753 85929157 ~ 85945179 (+) False LOC110516966
XM_036934361.1 mRNA downstream 134428 86152003 ~ 86182526 (+) False LOC118936859
XM_036934362.1 mRNA downstream 183469 86201044 ~ 86209191 (+) False LOC110513338
XM_036934363.1 mRNA downstream 183531 86201106 ~ 86209191 (+) False LOC110513338
XM_036934367.1 mRNA downstream 213205 86230780 ~ 86285648 (+) True LOC110514691
XR_005034311.1 mRNA downstream 239682 86257257 ~ 86258472 (+) False LOC118936862
TU1061784 other upstream 56259 85952164 ~ 85952673 (+) True LOC110528615
TU1061771 other upstream 106320 85901920 ~ 85902612 (+) False LOC118936495
TU1061788 other upstream 114195 85893094 ~ 85894737 (+) True LOC118966668
TU1061793 other upstream 222434 85785500 ~ 85786498 (+) True G931776
TU1061447 other upstream 483891 85523956 ~ 85525041 (+) False G931571
TU1062162 other downstream 183623 86201198 ~ 86204184 (+) True LOC110513338
TU1062423 other downstream 425475 86443050 ~ 86475840 (+) True G932184
TU1062558 other downstream 706362 86723937 ~ 86751664 (+) True LOC110518842
TU1062664 other downstream 980211 86997786 ~ 87019998 (+) False LOC110511479
TU1062663 other downstream 1101507 87119082 ~ 87126721 (+) True LOC110516832

Expression Profile