RNA id: XM_036989419.1


Basic Information

Item Value
RNA id XM_036989419.1
length 4673
RNA type mRNA
GC content 0.57
exon number 23
gene id LOC110518842
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 86704406 ~ 86830606 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgagagagagagagactgtcaccaAACAGATCGACTGAGTTTGGTAGCCTTACTGCacggaccacacacacactctccacaaTGCCGCATCGGCCCAGCACGTCACCTACATCGAGCTAACCAAGTGCCGAGAAAAGATATAGACCAGAGGACTTCCAAGGAGACAAACAGCCATGGAGGGTCTCTACTTTGACGTCAAGCCCCGTGACCAACGCCCCAGCAgccctccccttcccctcaccCCAAACAccgcccctcccctcccttctcctttaGCCCCCTCCCCCCTTATTCTCCCCCATAACATAACCTCTTTCTCAGccctcaccccctccccctcGTCACCCACCCCCCTCACCCCCAACACCATTCCtcacccagccctcagccccTCCCCCTCGGCAtcctcccccctcacccccaaCACCCATCCTCACCCAGCCCTCACCCCATCCCGCCTTAACCTCACCCCTAACAGATCGTCCTACACAACCCTCACCCTTacaccctcccccctccacctcacCCCTCTCGGAAGAaacacagaggaagaggaggaagaggttcAATACAGACTGACTCTGGTTGGCTGCCTCCCGGTCCATCACCTGACCACCATGGCCATGCTGCCCTGGGTCGTGGCTGAGATCGGGAGGCCTCGGCCTGGGGAGAGAGACAAGCCCGTAGTGGGTCGGCCGCCTGGAAGTCCTGCAAGTAGAGGCACACACACCGGAAACGGAGAGAGCGTTTCCTCACGACGACACCaggcggtgtgtctgtgtgtgtccgcctcgtgggtgaggtgtgtgtggacggaggaggaggtggagagggacaggCGACCGTGGGACCCCCTCACACACACGGTGTTGTTTGAGTGCCGGCCGCACCACGTCACCAAGCTACTCCACAACAGCAGGGAGCCGTGTAGCTTTGGTTGTCTGGTTCGAGACACACATCTCTGTTACTGCTACGTCTTCCAATGCCAGGACTGCACCAAggtccCCGAGATCATCAGTACGCTGCGTCAGGCCGGGAAGAGCTCGGCGCGCAACGATGACCTCGCGGCGCCCAAACCCGCCGCCTCTTCCTCAGAAGACTGTACTCCGTCCGCGTCGTCGGCCTTCGGCGCTGCCACCATGTTCGCCAAGAGGTTTGAGGTCCTGTTCTGTGGAAGAGTGACCGTCGCTCACAAGAAAGCCCCGCCCGCCTTGATTGACGAGTGCATCGAGAAATTCAGCCAATCCGTAGGGGCCGGGGGCGATCCTAAACCAGAAAGTGGCGGTGGATTGGTGGACGGGCTGCGGAGAGCTCTGGCCTTGCCGACGCTAACGCGAGATGGAGGAACTGGGGATGGAGCGGTCAGGGGAGGAGGATACGGTGCCTCAAGTGGTGGGAGGCCGGTGGTGTTCCAACCAGACCCCAGTTTCCCCTGCCTCCGGGCCCTGGATGAGAACGGCCTGTCAcctgaactacacacacacaccgctgggGTCCAGCCCACCAGTCTACAGGAGAACAGGACCATGCTGTTCATGgtggGTCGGTCTCAGATCTTCCTGGTCAGTCCAGACACTAAGAAGGTTGCCATAGAGAAGAGCTTCAGAGAAATATCTTTCTGCTCACAGggtatTCATCATGTGGATCACTTTGGGTTCATCTGTAGAGAGACAGTAGAAGGAGGGAGCTGTACATTCGTCTGCTATGTCTTCCAGTGTACTGATGAATCCCTGGTGGATGAGATCATGTTGACTTTAAAGCAGGCGTTCTCTGTGGCCGCCCTGCAGCAGAGTGTAAGGACCAGGAGCCAGCAGTGTGACAGTTGCCCCATGCAGCAGCTGCACAAGCTGTGTGAGAGGATAGAAGGTCTCCTCCCGTCTAAAGCCAAGCTCGAGTTTCAGAAACATCTGGCCACACTGGACAACCAGGAACAAGCTGCTGTGTTCGAGCACACTGTgagggccAGTCCTAAGAGTGACCAGGAGGAGAATGAGCTGGTGATGGGGTCTTTGAGGAGTCTGTATGAACAGAAACAGAGGAGTCATCAACACACAGATCACAGACCGgtACCAGAGGCTCCAGCCCCAGTAGAGGTCCAGTCCAGTAGCAGACAGAGATTAGAGCAGTTTAAAACCAGAGCAAAACGCTCCCTCACAGAGTCACTGGAGGGCATCTGGAAGGGAAGTAGCAAAACCAGGgctcagagagagaacagtgaaggAGACATCAGTTCATCTGACTCTACACTGAACTCCACTGaacaggacCCCTCCCTAGAagaccccctcccctcctccaatCCTCTGCGGTCTCACAACTCTACAGGGGACCTGAAACGTCtggacacctctcctctctccgtctctccttccttctcatccctgtctctgtcctcccggGACGCACGGTCCCAGCCGCATGGCTTCAGGCGGAGAGCCAGCACCTTCAGCCACTCCCCTTCCTACCACGATCACGCCCCTTCCTACCCTGACCACACCCCctcgtatacacacacaccccaggtaCCCAGCGGCTCCACCAAGCCCAAACTGGTCCGGCACTACTCTGTCAGCACCGACACTCCGCACCAGAGCAAACGACTCCAGGCGGACCCTactcttcctttcctctccttcccctctcctcttctctctcatcgaccctcatccccctctctcggGGGTCGCCTGGCCAAACGAAGTCCTCTGGGAGGTCTGCGCGCTCgtctccgctcctcctcctctgttcccaaCTTCCTCAAACTCCTCGCTCCTGTCCACGAGAGCCACCCCTGTGACTTAGACAAGAGGAGtgacgTAGCAGCCCTGTCCAGTCcggtagcagtgtgtgtggtagGAGACAGTCCTCTACGGAGACACTCCTGGAGACAACAGATCTTCCTTCGTGTCGCTACCCCTCAGAAAAACACTGACAGCAatgaCAGGGGTGACTGCTCCCTAGATGGCAGGGGCGTGTCTGTGTGCGGGGTTGGAGACGGATCACTGGGCGTGGTTCCGGAAGAGAGGAAGAAACGTGGCCGAGCAGAACTGAGACGGCTGTGGAGGAAGGCCATCCTGCAACAGACACTACTgctgaggatggagagagagaacaacaagatacaggCGTCGGAGAGTAAACGCCAGCGTCTGGACTATGAGGAGATAACTCCCTGTCTGAAGGACGTCACGCTGGTCTGGGAGAGCATGCTGGGAACTCAGGCCAGGTCGAAGGTCAAGTTCAACACCgacactgtccactctgctgtcgaacagggagTTCCTAGACAGTACAGAGGAGAGGTGTGGAAGTTCCTGTCAGAGCAGTTTGTATTGAGACAACCGGTTCCTGTCAGATGTCCATCTGACAACAGGCCTTATAAAGAACTGCTGAAACAACTGACCTCCcaacagcacgccatcctcatagacctgggtcGTACCTTTCCGACCCATCCTTATTTCCAGGCTCAGTTGGGGTCTGGTCAGCTGTCTCTCTATAACCTCCTGAAGGCCTACTCTCTACTGGACCCAGAggtGGGATACTGTCAGGGTCTCAGCTTCGTAGCAGGAGTTTTGTTGTTGCACATGGGAGAGGAGGACGCCTTCAACATGCTCCAGTTCCTCATGTATCATATGGGGCTTCGCAAGCAGTACAGACCTGACATGATTATACTACAGatTCAGATGTACCAGCTGTCTCGTCTCCTCCATGACTACCACAGAGACCTGTACGTCCATCTGGAACAGCATGAGATAGGACCGTCTCTCTATGCTGCTCCCTGGTTCCTCACGGCCTTCGCCTCGCACTTCCCTCTGGGCTTCGTAGCCAGGGTGTTTGacatGTTGTTTCTCCAGGGTTCGGAGGTGATCTTCAAGGTGTCGCTAAGTCTTCTGGGTAGTCACAAGCCCTTGATCCTACAGCACGACAGTCTGGAGTCTATAGTGGACTTCatcaagactacattacctaaCCTGGGACTGGTCCAGATGGAGAAGACCATCAACCAGgTGTGTGAGATGGACCTGTCCAATCAGCTGCAGGCGTACGAGGTGGAATACCACGTCTTACAGGACGAGCTGTGTGACACGCCCGCTCACCTCAACCAATCGCAGCGCACCGCCCAGCTGGAACGCACCAATCAGAGCCTCCGACAGCAAAACCTCGACCTGCTGGAGGAACtgcagGTGTCCCAGGCTCGTGTGTGTCGTCTGGAAGGCCAGGTGGAGGGGCTGGCCCAATCGGAGGCTCTGCTGAGAGAACGGGTGTTCgacctggaggaggagagaaacggaCTGCGGAGCGCCgtcacacacctgcacacactcCTCACCGCGctgggaatacacacacacacaacgcacgGGGACTTCAACCTGgaccctcacacacactccactgCCGACACAGATGGCccgagagatggacagagagatggccagagagatggacagagagatggcCCGAGAGATggccagagagatggacagagagatggcCCGAGAGATGGCCAGAGAGATGGCCCGAGAGATggccagagagatggacagagagatggcCCGAGAGATGGACAGGGTGTGGACGTCCCCACCAGAGAGGAGCCCAGACTGGGACAAGGGACAGCGatgtcctcccctctcctccctcatccacTGGCTCTACCAGAACACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1062547 lncRNA upstream 27936 86675792 ~ 86676470 (+) False G932270
TU1062546 lncRNA upstream 28009 86675792 ~ 86676397 (+) False G932270
TU1062548 lncRNA upstream 28009 86675792 ~ 86676397 (+) False G932270
TU1062549 lncRNA upstream 28009 86675792 ~ 86676397 (+) False G932270
TU1062550 lncRNA upstream 28009 86675792 ~ 86676397 (+) False G932270
TU1062567 lncRNA downstream 2437 86833043 ~ 86889386 (+) True G932285
TU1062561 lncRNA downstream 6025 86836631 ~ 86836900 (+) True G932279
TU1062608 lncRNA downstream 7211 86837817 ~ 86838443 (+) True G932317
TU1062619 lncRNA downstream 27784 86858390 ~ 86860594 (+) True G932327
TU1062621 lncRNA downstream 33292 86863898 ~ 86864494 (+) True G932328
XM_036934389.1 mRNA upstream 7477 86676590 ~ 86696929 (+) True pgm2
XM_036934385.1 mRNA upstream 32454 86581897 ~ 86671952 (+) False LOC118936868
XM_036934390.1 mRNA downstream 51746 86882352 ~ 86915711 (+) False LOC118936872
XR_005034318.1 mRNA downstream 51746 86882352 ~ 86916919 (+) False LOC118936872
XR_005034319.1 mRNA downstream 51746 86882352 ~ 86916919 (+) False LOC118936872
XR_005034320.1 mRNA downstream 51746 86882352 ~ 86916919 (+) False LOC118936872
XM_036934394.1 mRNA downstream 51747 86882353 ~ 86915711 (+) False LOC118936872
TU1062423 other upstream 228566 86443050 ~ 86475840 (+) True G932184
TU1062162 other upstream 500222 86201198 ~ 86204184 (+) True LOC110513338
TU1061780 other upstream 691865 86011799 ~ 86012541 (+) True LOC110528614
TU1061784 other upstream 751733 85952164 ~ 85952673 (+) True LOC110528615
TU1061771 other upstream 801794 85901920 ~ 85902612 (+) False LOC118936495
TU1062664 other downstream 167180 86997786 ~ 87019998 (+) False LOC110511479
TU1062663 other downstream 288476 87119082 ~ 87126721 (+) True LOC110516832
TU1062773 other downstream 364913 87195519 ~ 87288556 (+) False G932422
TU1062854 other downstream 550062 87380668 ~ 87390230 (+) False G932466
TU1062852 other downstream 557431 87388037 ~ 87389831 (+) True G932466

Expression Profile