RNA id: XR_005034320.1


Basic Information

Item Value
RNA id XR_005034320.1
length 3784
RNA type mRNA
GC content 0.49
exon number 7
gene id LOC118936872
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 86882352 ~ 86916919 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCCCGAGCCGAGCCGACCGGACCCGACCACACCCCTCGTCTCCCCTGCGAACCCACTCCAGTCCCGCCCTACGCCCGCGGTCATGTGACACGCTCAACAACGCACTCGCTGTGTCTCCGGAGAaatagaggagaagaagaagaatttcGTAACCGGGGGAAGTTTTGTTTCCGTGCCAGTCCCGACTTTATCTGTCATTTggagtttttgttgtttttccaaACGGCGATCGGTTGACCAATACGTGTGACACGGTTTTGTTATTTTCGACTGCGaaactttttttttaacagaACGGAATTTAAAacggatttatttattttttatttttattttttaccttacGCACGGAGACAGTTTACTAAGAGATTTAAACAACGGGAATAATTCACGAATAAACACACAATATTCTCCATTGTAAAgtctGGCTGCAGTCATGATGGTGTATGACTTTCCACTGAAGACAGACATGGAGACGGTGAGACTGGAGTCTCTCTATCAGTCTTATCCCTCGGTAGTGAACAGCGTTATCTTCACCCCTCATCCCTACCACCCCACacaatacgcacacacacacaccttctccccctcacacacactcacacacgcccaGTCCGCCAACCCCACCTCAAATACACAACTCGAACCAGTCGACTTGTCGGTCAGCAAAcgaccctctccctcctcctcctcctccccttcttcctgtTCCTCCACTTCCTCCCCGTACAGTCGTTCCTCCCCCcagccctccccctccctccattaccCCGTGTTGTTAGGCTCCGGCCCCGGGGTCGTCCAGGGTTCAGGGGTCATGCTGTCCCAGGTCATGCTACAACCCTtgtccatcctctacccctcctccccgCTGCACCTGCCTCAGCCAATCGCGGTCAACCGAACCGTCGCTGGCGAcgaccaccaccatcatcatcatcatcaccatcacaggCCGGCAGGAAGCTCACAACATCAGACAGCATCCTCCATGAAGTCAGAGCTCAGAGGCGACGCACACCACAAGCTAATCAAAACAGAGCATGCCCACGACTCATACAACCAGGAAATGACCTCATCGGTCATCAGCGCGCCACAGGCCTATAGCGAtaACAACCCGTCTGTGATCGTCCATTCTGGGGTTAATCACCCGTTGCCAATCGAGTCTCCGGACTCGATGAAGAAGAGACGAATCCACCGTTGTGATTTCAACAGCTGCAACAAAGTCTACACCAAGAGCTCTCATCTGAAGGCACATCGccgcacacacacaggagagaAGCCCTATAAGTGCATGTGGGAGGGGTGCACGTGGAAGTTCGCCCGTTCGGACGAACTGACTCGTCACTTCCGTAAACACACAGGCGTCAAACCGTTCCAGTGTCCCGACTGTGAACGCAGCTTCTCCCGATCCGACCACCTGGCTCTACATAAGAAACGGCACCTGCTGGTCTGAACGGCAACGCAACGCAACGGCTGTGAAACGTCATTTCGACACACAAGGCGAACGCAGCCCGTTGGGTAGTTGGTCCATACAGGACCCCAAGACAGGACCgttggacagagagagacccgGGGACTTAAACATCCTCTATCTGTCTATCACTTTattcagtcagccaatcagccgtcctcttcctctccactcctccacctcttcttaGTACCAGAGCTCCCCGTTGTCTCCCAGTACTCGCCGTTGTCTCCCAGTGCTCGCCGTTGTCTCCCAGTGCTCGCCGTTGTCTCCCAGTGCTGAAGGCGGATGGTGTTCGTAGgcccagatctaggatcagctaaaCCTCCAGACATCTTGACCTTaaccatagagagagacagacatcttaaccttaaccatagagagagacagacatcttGACCTTaaccatagagagagacagacatcttaaccttaaccatagagagagacagacatcttgaccatagagagagacagacatcttGACCTTaaccatagagagagacagacatcttGACCTTAaccatagagatagacagaggtcTTAACCATAGAGCTAGACAGAGGTCTTAaccatagagatagacagaggtcttaaccatagagatagacagaggtcttaaccatagagatagacagaggtcttaaccatagagatagacagaggtcttaaccatagagatagacagaggtcttaaccatagagatagacagaggtcttaaccatagagatagacagaggtcttaaccatagagatagacagaggtcTTAACCATAGAGCTAGAACGAGGACTCAACTTTGTACGGCGTCTGTGACGGCATGGGCAGCGCCAATGATCGCCATTTtaaagtgatacattttttaaatatatatatatatatatatatatatatatatatatattattttaaagcAGATATTTGTGATTTTAGCGCCATCTGCAGTGCCGGAGTCCTGAACCACATTTAGTCTTACGTTTattgtggccactagatggcggTGACATGGCTccatagagatagacagacatggctccatagagatagacagacatggctccatagagatagacagacatggctccatagagatagacagacatggctccatagagatagacagacatggctccatagagatagacagacatgGCTCCATGCCATTAACAAACCGTAACAACCtatttgaagaagaagaagacatttGCTCATAAGGCTGATCGCTCTCAAACCCCATAAGGATTCCCTACCCagtttgactactttaaaatggtggaagtccTCGATGTCCATGctaaaaaattacaaaaaacgGGTTCTAATCCTTCCAGAGAGTTCCTTTGTACCTCTATGAATGCATTATGGATACAGCACCACAGATACAACGATTAGACAGATGTttcaccatatatatatatatatagagagagagggagagaaacgttTGTTAACGGCTGACCTGAGATTAGAGTCAACGTGGACTGagtggctccctctgctggacgGAGGGGACTACCTGCTGCTCAGTActcagtggacacacacacacacacacacacacagctcaacagCCTGTACTGACTCTAGTCACATGAGTGGAGTCACAGGTCAACAGCAGGCTCTGGTAGAAGGGCTGTGGGGGTTCCCAACCACAGGTCAACAGCAGGCTCTGGTAGAGGGGTGGAAGGGCTGTGGGGGTTCCTAACCACAGGTCAACAGCAGGCTCTGGTAGAGGGAGGGGAACGGCTGTGGGGGTTCCTAACCACAGGTCAACAGCAGGCTCTGGTAGAGGGGGTGGAACGGCTGTGGGGGTTCCTAACCACAGGTCAACAGCAGGCTCTGGTAGAAGGGCTGTGGGGGTTCCCAACCACAGGTCAACAGCAGGCTCTGGTAGAGGGGGTGGAACGGCTGTGGGGGTTCCTAACCACAGGTCAACAGCAGGCTCTGGTAGAGGGGGTGGAACGGCTGTGGGGGTTCCTAACCACAGGTCAACAGCAGGCTCTGGTAGAGGGGGTGGAACGGCTGTGGGGGTTTCCAACCATTACAAGGCAAAGGCTTGTTGTCTTTGATTCTAGAAATGTGAAACAAACTCTTTTTATTATCCTGGGGCATTATCATGATCATTATTCTGTTTGATTATTTTTTAttcttattattataataattgttgttgttgttgttgttgttgttgttgttgttgttgttgtgtaaataAAATACTTCCATTGAGCCGGTTGAAAGTGGACTCGGCGATATGACATCATCATATACGGCAGGAAGCAGGGTGACTTCCTGCTTTACaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1062621 lncRNA upstream 17858 86863898 ~ 86864494 (+) True G932328
TU1062619 lncRNA upstream 21758 86858390 ~ 86860594 (+) True G932327
TU1062608 lncRNA upstream 43909 86837817 ~ 86838443 (+) True G932317
TU1062561 lncRNA upstream 45452 86836631 ~ 86836900 (+) True G932279
TU1062607 lncRNA upstream 52829 86828749 ~ 86829523 (+) True G932316
TU1062641 lncRNA downstream 23865 86940784 ~ 86941315 (+) True G932346
TU1062650 lncRNA downstream 33513 86950432 ~ 86950646 (+) True G932349
TU1062651 lncRNA downstream 38136 86955055 ~ 86955264 (+) True G932350
TU1062653 lncRNA downstream 39521 86956440 ~ 86958130 (+) True G932351
TU1062565 lncRNA downstream 86357 87003276 ~ 87003829 (+) True G932283
XM_036989419.1 mRNA upstream 51746 86704406 ~ 86830606 (+) False LOC110518842
XR_005034317.1 mRNA upstream 61338 86820240 ~ 86821014 (+) True LOC118936871
XM_036934389.1 mRNA upstream 185423 86676590 ~ 86696929 (+) True pgm2
XM_036934380.1 mRNA upstream 210400 86594744 ~ 86671952 (+) False LOC118936868
XM_036934397.1 mRNA downstream 3653 86920572 ~ 86939031 (+) True LOC110512499
XM_036934401.1 mRNA downstream 89987 87006906 ~ 87053372 (+) False LOC110511479
XM_036934400.1 mRNA downstream 89990 87006909 ~ 87053372 (+) False LOC110511479
XM_036934398.1 mRNA downstream 89991 87006910 ~ 87053372 (+) False LOC110511479
XM_036934399.1 mRNA downstream 89992 87006911 ~ 87053372 (+) False LOC110511479
TU1062558 other upstream 130688 86723937 ~ 86751664 (+) True LOC110518842
TU1062423 other upstream 406512 86443050 ~ 86475840 (+) True G932184
TU1062162 other upstream 678168 86201198 ~ 86204184 (+) True LOC110513338
TU1061780 other upstream 869811 86011799 ~ 86012541 (+) True LOC110528614
TU1061784 other upstream 929679 85952164 ~ 85952673 (+) True LOC110528615
TU1062664 other downstream 80867 86997786 ~ 87019998 (+) False LOC110511479
TU1062663 other downstream 202163 87119082 ~ 87126721 (+) True LOC110516832
TU1062773 other downstream 278600 87195519 ~ 87288556 (+) False G932422
TU1062854 other downstream 463749 87380668 ~ 87390230 (+) False G932466
TU1062852 other downstream 471118 87388037 ~ 87389831 (+) True G932466

Expression Profile