RNA id: TU963173


Basic Information

Item Value
RNA id TU963173
length 511
lncRNA type intronic
GC content 0.41
exon number 2
gene id G845624
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 1801525 ~ 1804741 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggctagttgagaacacctttatttaaccaggtaggccagttgagaacacctttatttaaccaggtaggccagttgagaacacctttatttaaccaggtaggccagttgagaacacctttatttaaccaggtaggctagttgagaacacctttatttaaccaggtaggcgagttgagaacacctttatttaaccaggtaggctagttgagaacacctttatttaaccaggtagactagttgagaacacctttatttaaccaggtaggccagttgagaacacctttatttaaccaggtaggccagttgagaacacctttatttaaccaggtaggccagttgagaacacctttatttaaccaggtaggccagttgagaacacctttatttaaccaggtaggccagttgagaacacctttatttaaccaggtaggccagttgagaacacctttatttaaccaggtaggccagttgagaacacctttatttaaccaggtaggctagttgagaacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU963144 lncRNA downstream 46402 1754842 ~ 1755123 (-) True G845602
TU963129 lncRNA downstream 81369 1719595 ~ 1720156 (-) True G845588
TU963126 lncRNA downstream 86817 1714231 ~ 1714708 (-) True G845586
TU963113 lncRNA downstream 138391 1662479 ~ 1663134 (-) True G845576
TU963076 lncRNA downstream 196676 1604562 ~ 1604849 (-) True G845549
TU963176 lncRNA upstream 465 1805206 ~ 1805445 (-) True G845625
TU963185 lncRNA upstream 92562 1897303 ~ 1897645 (-) True G845633
TU963186 lncRNA upstream 93981 1898722 ~ 1899650 (-) True LOC110534823
TU963221 lncRNA upstream 95890 1900631 ~ 1900865 (-) True G845667
TU963222 lncRNA upstream 111256 1915997 ~ 1916510 (-) True G845668
XM_036989468.1 mRNA downstream 95411 1597349 ~ 1706114 (-) False LOC110534825
XM_036989469.1 mRNA downstream 95411 1597349 ~ 1706114 (-) False LOC110534825
XM_036989470.1 mRNA downstream 95411 1597349 ~ 1706114 (-) False LOC110534825
XR_002474932.2 mRNA downstream 210888 1586498 ~ 1590637 (-) False LOC110533263
XR_005053514.1 mRNA downstream 453603 1277412 ~ 1347922 (-) False LOC110518095
LOC110534823 mRNA upstream 93132 1897873 ~ 2003474 (-) False LOC110534823
XM_036989479.1 mRNA upstream 322953 2127694 ~ 2171793 (-) True LOC110534810
XM_036989480.1 mRNA upstream 391425 2196166 ~ 2217972 (-) False LOC110534809
XM_036989481.1 mRNA upstream 391426 2196167 ~ 2217970 (-) False LOC110534809
XM_036989484.1 mRNA upstream 503803 2308544 ~ 2395996 (-) False LOC110533230
TU963104 other downstream 149532 1649940 ~ 1651993 (-) True G845570
TU962835 other downstream 212043 1588364 ~ 1589482 (-) True LOC110533263
TU962511 other downstream 565817 1234547 ~ 1235708 (-) True G845133
TU962296 other downstream 771529 1028140 ~ 1029996 (-) False G844976
TU962281 other downstream 774083 1025654 ~ 1027442 (-) True G844975
TU963237 other upstream 161885 1966626 ~ 1967072 (-) True G845683
TU963392 other upstream 288494 2093235 ~ 2098359 (-) True G845769
TU963461 other upstream 351649 2156390 ~ 2157099 (-) True G845814
TU963853 other upstream 838568 2643309 ~ 2643647 (-) True G846125
TU964042 other upstream 944212 2748953 ~ 2753103 (-) True G846290

Expression Profile