RNA id: TU963222


Basic Information

Item Value
RNA id TU963222
length 514
lncRNA type intronic
GC content 0.55
exon number 1
gene id G845668
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 1915997 ~ 1916510 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acgctgtatatggcccaggaggcctgtagctaagggaactcagtgaggaacgctgtatatggcccaggaggcctgtagctaagggaactcagtgaggaacgctgtatatggcccaggaggcctgtagctAAGTGAACtccgtgaggaacgctgtatatggcccaggaggcctgtagctaagggaactcagtgaggaacgctgtatatggcccaggaggcctgtagctaagggaactcagtgaggaacgctgtatatggcccaggaggcctgtagctaagggaactcagtgaggaacgctgtaaatggcccaggaggcctgtagctaagggaactcagtgaggaacgctgtaaatggcccaggaggcctgtagctaagggaactcagtgaggaacgctgtatatggcccaggaggcctgtagctaagggaactcagtgaggaacgctgtatatggcccaggaggcctgtagctaagggaactcagtgaggaacgctgtaaatggcccaggaggcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU963221 lncRNA downstream 15132 1900631 ~ 1900865 (-) True G845667
TU963186 lncRNA downstream 16347 1898722 ~ 1899650 (-) True LOC110534823
TU963185 lncRNA downstream 18352 1897303 ~ 1897645 (-) True G845633
TU963176 lncRNA downstream 110552 1805206 ~ 1805445 (-) True G845625
TU963172 lncRNA downstream 111256 1802879 ~ 1804741 (-) False G845624
TU963226 lncRNA upstream 11391 1927901 ~ 1928173 (-) True G845672
TU963227 lncRNA upstream 11845 1928355 ~ 1928569 (-) True G845673
TU963228 lncRNA upstream 13550 1930060 ~ 1930281 (-) True G845674
TU963233 lncRNA upstream 19371 1935881 ~ 1936198 (-) True G845679
TU963234 lncRNA upstream 21080 1937590 ~ 1937871 (-) True G845680
XM_036989471.1 mRNA downstream 35091 1597349 ~ 1880906 (-) True LOC110534825
XM_036989468.1 mRNA downstream 209883 1597349 ~ 1706114 (-) False LOC110534825
XM_036989469.1 mRNA downstream 209883 1597349 ~ 1706114 (-) False LOC110534825
XM_036989470.1 mRNA downstream 209883 1597349 ~ 1706114 (-) False LOC110534825
XR_002474932.2 mRNA downstream 325360 1586498 ~ 1590637 (-) False LOC110533263
XM_036989479.1 mRNA upstream 211184 2127694 ~ 2171793 (-) True LOC110534810
XM_036989480.1 mRNA upstream 279656 2196166 ~ 2217972 (-) False LOC110534809
XM_036989481.1 mRNA upstream 279657 2196167 ~ 2217970 (-) False LOC110534809
XM_036989484.1 mRNA upstream 392034 2308544 ~ 2395996 (-) False LOC110533230
XM_036989485.1 mRNA upstream 392034 2308544 ~ 2395996 (-) True LOC110533230
TU963104 other downstream 264004 1649940 ~ 1651993 (-) True G845570
TU962835 other downstream 326515 1588364 ~ 1589482 (-) True LOC110533263
TU962511 other downstream 680289 1234547 ~ 1235708 (-) True G845133
TU962296 other downstream 886001 1028140 ~ 1029996 (-) False G844976
TU962281 other downstream 888555 1025654 ~ 1027442 (-) True G844975
TU963237 other upstream 50116 1966626 ~ 1967072 (-) True G845683
TU963392 other upstream 176725 2093235 ~ 2098359 (-) True G845769
TU963461 other upstream 239880 2156390 ~ 2157099 (-) True G845814
TU963853 other upstream 726799 2643309 ~ 2643647 (-) True G846125
TU964042 other upstream 832443 2748953 ~ 2753103 (-) True G846290

Expression Profile