RNA id: TU963236


Basic Information

Item Value
RNA id TU963236
length 1437
lncRNA type intronic
GC content 0.57
exon number 1
gene id G845682
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 1964244 ~ 1965680 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acccacctgagggactgtcttctctgcacctgTGTGACTGTCTCTACTCAACTGTTGGACTGCCtctacccaccagagggactgtctaccacccaccagagggactctcTACTAacaaccagagggactgtctctacccacctgaggggctgtctctacccacctgagggactgtctctacccacctgagggactgtctctacccacctgagggactgtctctacccaactGAGTGACTGATttctacccacctgtgggactgtctcctacacatctgagggactgtctcctacccacctgagggactgtctactacccaccagagggactgtctctacccacctgagggactgtctctacccacctgagggactgtctctacccacctgagggactgtctactacccaccTGAAGGGATGTCTACTACCCAACTGagagactgtctctacccaccagagggactgtctctacccacctgagggactgtctctacccacctgagggactgtctctacccacctgagggactgtctctacccaactgagggactgtctactacccaccTGAAGGAATGTCTACTACCCAACTGagagactgtctctacccaccagagggactgtctctacccacctgagggactgtctctacccacctgagggactgtctctacccacctgagggactgtctctacccacctgagggactgtctcctacgcacctgagggactgtctctacccacctgagggactgtctctacccacctgagggactgtctctacccacctgagggactgtctctacccacctgagggactgtctctacccacctgagggactgtctcctacccaccttagggaatgtctcctacccacctgagggactgtctctacccacctgagggactgtctctacccacctgagggactgtctctacccacctgagggactatctctacccaccagagggactgtctctacccaccttagggaatgtctcctacccacctgagggactgtctctacccaccggAGGGACtatctctacccacctgagggactgtctcctacccacctgagggactgtctcctacccaccttagggaatgtctcctacccacctgagggactgtctctacccaccggAGGGACtatctctacccacctgagggactgtctcctacccacctgagggactgtctcctacccacctgagggactgtctcctacccacctgagggactgtctctacccacctgagggactgtctctacccgcCTGAGAGACTGATTTCTACCCAACTGAAGGACTGTCTTCTACGCACACgagggactgtctaccacccaccagagggactgtctacaACCCACGAGAGGGACTCTCTACTAccaaccagagggactgtctctacccacctgctggactgtctcctac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU963235 lncRNA downstream 20088 1943717 ~ 1944156 (-) True G845681
TU963234 lncRNA downstream 26373 1937590 ~ 1937871 (-) True G845680
TU963233 lncRNA downstream 28046 1935881 ~ 1936198 (-) True G845679
TU963228 lncRNA downstream 33963 1930060 ~ 1930281 (-) True G845674
TU963227 lncRNA downstream 35675 1928355 ~ 1928569 (-) True G845673
TU963238 lncRNA upstream 18563 1984243 ~ 1985533 (-) True G845684
TU963239 lncRNA upstream 21951 1987631 ~ 1990646 (-) True G845685
TU963250 lncRNA upstream 39349 2005029 ~ 2005464 (-) True G845696
TU963251 lncRNA upstream 40184 2005864 ~ 2006075 (-) True G845697
TU963255 lncRNA upstream 48272 2013952 ~ 2014160 (-) True G845701
XM_036989471.1 mRNA downstream 83338 1597349 ~ 1880906 (-) True LOC110534825
XM_036989468.1 mRNA downstream 258130 1597349 ~ 1706114 (-) False LOC110534825
XM_036989469.1 mRNA downstream 258130 1597349 ~ 1706114 (-) False LOC110534825
XM_036989470.1 mRNA downstream 258130 1597349 ~ 1706114 (-) False LOC110534825
XR_002474932.2 mRNA downstream 373607 1586498 ~ 1590637 (-) False LOC110533263
XM_036989479.1 mRNA upstream 162014 2127694 ~ 2171793 (-) True LOC110534810
XM_036989480.1 mRNA upstream 230486 2196166 ~ 2217972 (-) False LOC110534809
XM_036989481.1 mRNA upstream 230487 2196167 ~ 2217970 (-) False LOC110534809
XM_036989484.1 mRNA upstream 342864 2308544 ~ 2395996 (-) False LOC110533230
XM_036989485.1 mRNA upstream 342864 2308544 ~ 2395996 (-) True LOC110533230
TU963104 other downstream 312251 1649940 ~ 1651993 (-) True G845570
TU962835 other downstream 374762 1588364 ~ 1589482 (-) True LOC110533263
TU962511 other downstream 728536 1234547 ~ 1235708 (-) True G845133
TU962296 other downstream 934248 1028140 ~ 1029996 (-) False G844976
TU962281 other downstream 936802 1025654 ~ 1027442 (-) True G844975
TU963237 other upstream 946 1966626 ~ 1967072 (-) True G845683
TU963392 other upstream 127555 2093235 ~ 2098359 (-) True G845769
TU963461 other upstream 190710 2156390 ~ 2157099 (-) True G845814
TU963853 other upstream 677629 2643309 ~ 2643647 (-) True G846125
TU964042 other upstream 783273 2748953 ~ 2753103 (-) True G846290

Expression Profile