RNA id: TU963238


Basic Information

Item Value
RNA id TU963238
length 1291
lncRNA type intronic
GC content 0.57
exon number 1
gene id G845684
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 1984243 ~ 1985533 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtctctacccacctgagggactgtctctacccacctgagggactgatttctacccacctgagggactgtcttctaCGCACACGTgggactgtctaccacccaccagagggactgtctactacccacGAGAGGGACTCTCTACTAccaaccagagggactgtctctacccacctgctggactgtctactacccacctgcgggactgtctactacccacctgtgggactgtctctacccacctgagggactgtctctacccacctgagggactgtcttctctgcacctgtgagactgtctctactcaactgttggactgtctctacccagctgcgggactgtctaccacccaccagagggactgtctaccacccaccagagggactctctactaccaaccagagggactgtctctacccacctgtatgactatctctacccacctgtgggactgtctctacccgcctgtgggactgtctctacccacctgagggactttctctacccacctgtgggactgtctctacccacctgagggactgtctctacccacctgtatgactgtctctacccacctgagggactgtctctacccacctgagggactgtctctacccaactgtatgactgtctctacactccagagggactgtctctacccacctgctggactgtctcctacccacctgagggactgtctcctacccaccgtagggaatgtctcctacccacctgagggactgtctcctacccacctgagggactgtctcctacccacctgagggactgtcttctaCACACACgagggactgtctaccacccaccagagggactgtctactacccacgagagggactgtctctacccacgtGAGGGACTGTCtcgacccacctgagggactgtgtactacccacctgagggacgtctctacccacctgagggactgtcttctctgcacctgtgttactgtctctactcAACTGATGGACTGCCTCTACCCACCTGcgggactgtctaccacccaccagagggactgtctttACCCACCtttgggactgtctctacccacctgtgggactgtctctacccacctgagggactgtctctacccacctgagggactgtcttctctgcacctgtgagactgtctctactcaactgttggactgtctctacccagctgcgggactgtctaccacccaccagagggactgtctactacccacGTGAGGGACTGTCtcgacccacctgagggactgtctctacccacctgagggactgtctctacccacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU963236 lncRNA downstream 18563 1964244 ~ 1965680 (-) True G845682
TU963235 lncRNA downstream 40087 1943717 ~ 1944156 (-) True G845681
TU963234 lncRNA downstream 46372 1937590 ~ 1937871 (-) True G845680
TU963233 lncRNA downstream 48045 1935881 ~ 1936198 (-) True G845679
TU963228 lncRNA downstream 53962 1930060 ~ 1930281 (-) True G845674
TU963239 lncRNA upstream 2098 1987631 ~ 1990646 (-) True G845685
TU963250 lncRNA upstream 19496 2005029 ~ 2005464 (-) True G845696
TU963251 lncRNA upstream 20331 2005864 ~ 2006075 (-) True G845697
TU963255 lncRNA upstream 28419 2013952 ~ 2014160 (-) True G845701
TU963260 lncRNA upstream 33092 2018625 ~ 2018826 (-) True G845706
XM_036989471.1 mRNA downstream 103337 1597349 ~ 1880906 (-) True LOC110534825
XM_036989468.1 mRNA downstream 278129 1597349 ~ 1706114 (-) False LOC110534825
XM_036989469.1 mRNA downstream 278129 1597349 ~ 1706114 (-) False LOC110534825
XM_036989470.1 mRNA downstream 278129 1597349 ~ 1706114 (-) False LOC110534825
XR_002474932.2 mRNA downstream 393606 1586498 ~ 1590637 (-) False LOC110533263
XM_036989479.1 mRNA upstream 142161 2127694 ~ 2171793 (-) True LOC110534810
XM_036989480.1 mRNA upstream 210633 2196166 ~ 2217972 (-) False LOC110534809
XM_036989481.1 mRNA upstream 210634 2196167 ~ 2217970 (-) False LOC110534809
XM_036989484.1 mRNA upstream 323011 2308544 ~ 2395996 (-) False LOC110533230
XM_036989485.1 mRNA upstream 323011 2308544 ~ 2395996 (-) True LOC110533230
TU963237 other downstream 17171 1966626 ~ 1967072 (-) True G845683
TU963104 other downstream 332250 1649940 ~ 1651993 (-) True G845570
TU962835 other downstream 394761 1588364 ~ 1589482 (-) True LOC110533263
TU962511 other downstream 748535 1234547 ~ 1235708 (-) True G845133
TU962296 other downstream 954247 1028140 ~ 1029996 (-) False G844976
TU963392 other upstream 107702 2093235 ~ 2098359 (-) True G845769
TU963461 other upstream 170857 2156390 ~ 2157099 (-) True G845814
TU963853 other upstream 657776 2643309 ~ 2643647 (-) True G846125
TU964042 other upstream 763420 2748953 ~ 2753103 (-) True G846290
TU964319 other upstream 1087101 3072634 ~ 3077507 (-) True LOC110534827

Expression Profile