RNA id: TU964227


Basic Information

Item Value
RNA id TU964227
length 963
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G846434
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 2967639 ~ 2969690 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aacacacacacacaaatacaaacacagacaGGCTCACCATCTCAAAGAGTAGTCTGGCCAGTTTTTCAGAATCTCTATTTGaaggtgagaggggaggagacgTTGAAGAAGGTGGTGCCATACTCTGTAGGTACGGCTTTAGAGAGACAACCCTTAACATACTCTGTAGGTACGGCTTTAGAGAGACAACCCTTAACATACTCTGTAGCTACGGCTTTAGAGAGACACAACCCTTAACATACTCTGTAGGTACGGCTTTAGAGAGACACAACCCTTAACATACTCTGTAGGTACGGCTTTAGAGAGACACAACCCTTAACATACTCTGTATGCACGGCTTTAGAGAGACAACCCTTAACATACTCTGTagctgaaagagctgcttcctgtggtTGGccttcctatgttgaacataataaacggctccctatccaccggatttgtaccaaactcactaacaGTGACaataataaagcctctcttgaaaaatccgaaccttgacccagaaaatataaaaaactaatcggcctatatcgaatctcccattcctctcaaattttagaaaaagctgttgcgcagcaactcactgccttcctgaagacaaacaatgtatacgaaatgcttcagtctggttttagaccccatcatagcactgagactgcacttgtgaaggtggtaaattaccttttaatggagtcagaccgaggctctgcatctgttctcgtgcttctagaccttagtgctgcttttgacaccatcgatcaccacattcttttggagagattggaaacccaaattggtctacacggacaagttctggcctggtttagatcttatctgtcagaaagatatcagtttgtctctgtagacggtttgtcctctgacaaatcaactgtacattttggtgttcctcaaggttccgttttaggaccactattgttttcactatatattctacctctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU964124 lncRNA downstream 104069 2863098 ~ 2863570 (-) True G846354
TU964123 lncRNA downstream 114915 2848866 ~ 2852724 (-) True G846353
TU964122 lncRNA downstream 118492 2846395 ~ 2849147 (-) True G846352
TU964093 lncRNA downstream 139477 2827789 ~ 2828162 (-) True G846334
TU964090 lncRNA downstream 145465 2821940 ~ 2822174 (-) True G846331
TU964238 lncRNA upstream 1669 2971359 ~ 2979647 (-) True G846435
TU964245 lncRNA upstream 15202 2984892 ~ 2985236 (-) True G846442
TU964249 lncRNA upstream 18957 2988647 ~ 2989090 (-) True G846446
TU964271 lncRNA upstream 37986 3007676 ~ 3009665 (-) False G846461
TU964272 lncRNA upstream 39562 3009252 ~ 3009665 (-) True G846461
XM_036989484.1 mRNA downstream 571643 2308544 ~ 2395996 (-) False LOC110533230
XM_036989485.1 mRNA downstream 571643 2308544 ~ 2395996 (-) True LOC110533230
XM_036989480.1 mRNA downstream 749667 2196166 ~ 2217972 (-) False LOC110534809
XM_036989481.1 mRNA downstream 749669 2196167 ~ 2217970 (-) False LOC110534809
XM_036989479.1 mRNA downstream 795846 2127694 ~ 2171793 (-) True LOC110534810
XM_036934546.1 mRNA upstream 102190 3071880 ~ 3079986 (-) False LOC110534827
LOC110534828 mRNA upstream 122845 3092535 ~ 3093211 (-) True LOC110534828
XR_005053547.1 mRNA upstream 181632 3151322 ~ 3153256 (-) False LOC110533269
XM_021617353.2 mRNA upstream 181632 3151322 ~ 3153275 (-) False LOC110533269
XM_021617354.2 mRNA upstream 219272 3188962 ~ 3190885 (-) True LOC110533270
TU964042 other downstream 214536 2748953 ~ 2753103 (-) True G846290
TU963853 other downstream 323992 2643309 ~ 2643647 (-) True G846125
TU963461 other downstream 810540 2156390 ~ 2157099 (-) True G845814
TU963392 other downstream 869280 2093235 ~ 2098359 (-) True G845769
TU963237 other downstream 1000567 1966626 ~ 1967072 (-) True G845683
TU964319 other upstream 102944 3072634 ~ 3077507 (-) True LOC110534827
TU964312 other upstream 181700 3151390 ~ 3153223 (-) False LOC110533269
TU964313 other upstream 181700 3151390 ~ 3153223 (-) True LOC110533269
TU964445 other upstream 298059 3267749 ~ 3300488 (-) True G846600
TU964450 other upstream 310920 3280610 ~ 3281873 (-) True smyd4

Expression Profile