RNA id: TU964265


Basic Information

Item Value
RNA id TU964265
length 2733
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G846457
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 3058347 ~ 3063161 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGACAGATGTATGTATTCCATGTGAAGTATAGAAGGTCAAGAGAGAAGAAGCATCTAGATTACTATTATTTACAATCTGTTTGAAAAATGATTTTTGATATTATCACTGTACAAGCTTGAAACTCTGATCGCTGAGAAACTATACTCTTTGGGCTACGTCCCAAATCGCATCCTATTCACCTgcgaagtgcactacttttgaccagagccatatgggtagtgcactatgcagggaaatATGATACAATTTGGGACGTATCCTTTAAGACCTAGTGCTgcaagaaagcaaaaaaaataaaaattaaaaataaaaataaggatTATATTAaactatgaacatttgaaaataaaaacagaaaataaaatgAGAAGTATAACATGTTTACAATAATTCTGTACGTCAATGATTAGGAGGATGGTTCTGTTCTGCTGCTTGTTGTCTGCGTCCTAAATTGGCACCTTATttcccctaaatagtgcactactttggaccccGGTCCCTATGTCAGTAAGTAGCCTTGTCTGAGCTAGAAAAGCCCATAAGACAGGAGCGTGAGgtagcttgatgtacaagtacaccctctGGACAGGACGCTAGCCTATCACAGGTTCTACGGGCCacggttgaaagtagtgcactatatatggaaaacGGGAGCCAATCGGAGGGAGGGGGGCGGGACGCAGACCCTGTCACCAAGGTAACGGTTTGAACCACTGTctagaaagctagctagctaacccatggtgtacacacagacactaagATACTGTATCAACATACTGGATCTATAGGCCTCAACTTGTTCAATATAACATTCATATTAAATATATTCTACACATATGGTAActtctttttatatatatatattttttatattaatCCCATTGGAAAAATATAAAATAGAATAACATTTTCTTTTTACAGGTTTTCGATGTGGTGGGCGGCGGAGGGGGGTCCGAGGTTAAGGGGGCGGGGGGATGGCGTGGGGTCAGAGGTTAAGGGGGCGGGGGGATGGCGTGGGGTCAGAGGTTAAGGGGGCGGGGGGATGGCGTGGGGTCAGAGGTTAAGGGGGCACATGCGTTCAgtgttgttaaaaaaaaatggctgaagaagagaggagggagaaaggagattTGGAAGAAAATAATTATTTATTCCAGAATGGTTTCTTTACCTTATCTTAGAGTTCAAGACTGATAACTACACTATGAAGAGTGTCCAAACACACTTTTTGATCATTTGAAATAAAAAttcacttccttatgttataaaatacattttaccagGACAAATATGATTATCCATGTTCTGAATCgctcattatatatatatatattatatattttatttttttaagtctgATTTTGTAGCCTAATCCATCCGATAATAAGCACTCTGCCGACATAGAGGTGCAAGGTTTCTCGTAACAACTTCTGAGGATTTAAAATGTTGTGGTCGTTGTCGTCTACCAAGTTGTTTCTACAGGTCgagaaaaaaaatgaattagACGTGAAATAAATGTCAAAAaagatttgaaaaaaaaaagcTCCGTTGACATTTCAGAGACTCGTTTGGTTTTGTGAAAAATAttctaaaaaacattttatttattttttaagaagAGAAATTTAGAATGAATATGAAAAGCGTTAcactaaaatatgaaaatactacACGTCATATCTCTAAACAGATATCTATCTGAATTgtatattgttttatgtcctgcagatgagagagaaagatgagttCAAGGGGAAAAGTGAGTCTGTCAGGTAGCCTTCATTCTCAGACAGCATCGAGCTGACGCCATGTTGTgacattttcaggatttttttggCCCCTTTTGTTTCTCTGGCCTCTGTTGATTTAGTCACCCTAATTCTGACCATCCTACCATGGTAAAAAAAAGTGCAATAACCTTTAAACGGCTCATGATAGAGACATGGAATATTGGAGTATTGGTTTTCTTAGAGGATTATCTACACAATTAACATATTATTTTACCCAATGGTTCAAAAGAGGCGTTTTTGATCGACACCCTACGCTTTGGTcgtagaaaagagagggagggatattctgtctgtctttcccctAGTTCCCAGTCCCCTCGTTCAGGGAGAAAagggaagatggaggagggacattctgtctgtctttcccctAGTTCCTAGTCCCCTCGTTCAGGGAGAAAagggaagatggaggagggacattctgtctttctttccccTAGTTCATAGTCCCCTCGTTCAGGGAGAAAagggaagatggaggagggaCATTCTGTCTTGCTTCTCCTAGTTCAGGAAGGATGAGCGATCTGACAGAAGGAGGAAAGGACTGACTGTCAAAACACAGTCAACAGCatgttattatggccaaacaacaacaaggtggttggttggttggttggttggttggttggttggttggttggtttgtttGTTAGTCAGTCATTGGTTGGAACCTTGGTGGGGTAATAAAACAGTAGTTAATCCATCCATGAACTAGTGGAAGATTTAAGGACAGAAGTGATAGAGGGGGAATCTTCTCTATACACaggagaccgtgtgtgtgtgtgtgtgtgtgtgtgtcagcatgaTAGAGAGACTGCAGGACATCCAGTGTGTTGGTTGGATCCAGGGTGGATGattaaagagggagggaggtgggtattTACAGGATGACACAGCAGTTACTCTCtccagtcttctctctgtttct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU964285 lncRNA downstream 33415 3024339 ~ 3024932 (-) True G846472
TU964276 lncRNA downstream 42990 3012230 ~ 3015357 (-) True G846465
TU964271 lncRNA downstream 48682 3007676 ~ 3009665 (-) False G846461
TU964272 lncRNA downstream 48682 3009252 ~ 3009665 (-) True G846461
TU964249 lncRNA downstream 69257 2988647 ~ 2989090 (-) True G846446
TU964323 lncRNA upstream 21864 3083215 ~ 3083800 (-) True G846506
TU964365 lncRNA upstream 101963 3163314 ~ 3163551 (-) True G846547
TU964398 lncRNA upstream 201838 3263189 ~ 3263538 (-) True G846567
TU964443 lncRNA upstream 206398 3267749 ~ 3269295 (-) False G846600
TU964462 lncRNA upstream 250052 3311403 ~ 3311608 (-) True G846614
XM_036989484.1 mRNA downstream 662351 2308544 ~ 2395996 (-) False LOC110533230
XM_036989485.1 mRNA downstream 662351 2308544 ~ 2395996 (-) True LOC110533230
XM_036989480.1 mRNA downstream 840375 2196166 ~ 2217972 (-) False LOC110534809
XM_036989481.1 mRNA downstream 840377 2196167 ~ 2217970 (-) False LOC110534809
XM_036989479.1 mRNA downstream 886554 2127694 ~ 2171793 (-) True LOC110534810
XM_036934546.1 mRNA upstream 10529 3071880 ~ 3079986 (-) False LOC110534827
LOC110534828 mRNA upstream 31184 3092535 ~ 3093211 (-) True LOC110534828
XR_005053547.1 mRNA upstream 89971 3151322 ~ 3153256 (-) False LOC110533269
XM_021617353.2 mRNA upstream 89971 3151322 ~ 3153275 (-) False LOC110533269
XM_021617354.2 mRNA upstream 127611 3188962 ~ 3190885 (-) True LOC110533270
TU964042 other downstream 305244 2748953 ~ 2753103 (-) True G846290
TU963853 other downstream 414700 2643309 ~ 2643647 (-) True G846125
TU963461 other downstream 901248 2156390 ~ 2157099 (-) True G845814
TU963392 other downstream 959988 2093235 ~ 2098359 (-) True G845769
TU963237 other downstream 1091275 1966626 ~ 1967072 (-) True G845683
TU964319 other upstream 11283 3072634 ~ 3077507 (-) True LOC110534827
TU964312 other upstream 90039 3151390 ~ 3153223 (-) False LOC110533269
TU964313 other upstream 90039 3151390 ~ 3153223 (-) True LOC110533269
TU964445 other upstream 206398 3267749 ~ 3300488 (-) True G846600
TU964450 other upstream 219259 3280610 ~ 3281873 (-) True smyd4

Expression Profile