RNA id: TU965698


Basic Information

Item Value
RNA id TU965698
length 525
lncRNA type inter_gene
GC content 0.55
exon number 2
gene id G847571
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 4062147 ~ 4066219 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcccaactccagttcttgagtacccccaacagcccaactccagtcctccagtatccccaacagcccaactccagttcttgagtatccccaacagcccaactccagttcttgagtatccccaacagcccaactccagtcctccagtatccccaacagcccaactccagtcctccagtatccccaacagcccaactccagttcttgagtacccccaacagcccaactccagtcctccagtatccccaacagcccaactccagttccttcagtatccccaacagcccaactccagttctccagtatccccaacagcccaactccagtcctctgatacccccaacagcccaactccagttcttgagtaccccaacagcccaactccagtcctccagtatccccaacagcccaactccagttccttgagtatccccaacagcccaactccagttcttgagtatccccaacagcccaactccagttcttgagtatccccaacagcccaactccagtcctccagtatcccca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU965694 lncRNA downstream 678 4043851 ~ 4061469 (-) True G847568
TU965683 lncRNA downstream 2381 4057827 ~ 4059766 (-) True G847557
TU965695 lncRNA downstream 13979 4044252 ~ 4048168 (-) True G847569
TU965669 lncRNA downstream 19590 4014524 ~ 4042557 (-) False G847548
TU965667 lncRNA downstream 19590 4032710 ~ 4042557 (-) False G847548
TU965713 lncRNA upstream 39756 4105975 ~ 4106301 (-) True G847586
TU965714 lncRNA upstream 43658 4109877 ~ 4110078 (-) True G847587
TU965715 lncRNA upstream 44162 4110381 ~ 4110580 (-) True G847588
TU965693 lncRNA upstream 70754 4136973 ~ 4140751 (-) True G847567
TU965839 lncRNA upstream 256418 4322637 ~ 4323090 (-) True G847705
XM_036989507.1 mRNA downstream 66392 3968210 ~ 3995755 (-) True LOC110491261
XM_036989508.1 mRNA downstream 66441 3968210 ~ 3995706 (-) False LOC110491261
XM_036989510.1 mRNA downstream 66549 3968210 ~ 3995598 (-) False LOC110491261
XM_036989505.1 mRNA downstream 94784 3930199 ~ 3967363 (-) True LOC110492807
XM_036989506.1 mRNA downstream 102245 3930198 ~ 3959902 (-) False LOC110492807
XM_021617325.2 mRNA upstream 22707 4088926 ~ 4107932 (-) True LOC110533247
XM_021617326.2 mRNA upstream 74598 4140817 ~ 4148309 (-) True cfap300
XM_036989511.1 mRNA upstream 196560 4262779 ~ 4283484 (-) True LOC110533249
XM_036989518.1 mRNA upstream 219866 4286085 ~ 4301348 (-) False c10h11orf1
XM_036989516.1 mRNA upstream 219866 4286085 ~ 4301364 (-) False c10h11orf1
TU964445 other downstream 761659 3267749 ~ 3300488 (-) True G846600
TU964450 other downstream 780274 3280610 ~ 3281873 (-) True smyd4
TU964312 other downstream 908924 3151390 ~ 3153223 (-) False LOC110533269
TU964313 other downstream 908924 3151390 ~ 3153223 (-) True LOC110533269
TU964319 other downstream 984640 3072634 ~ 3077507 (-) True LOC110534827
TU965880 other upstream 350387 4416606 ~ 4419950 (-) False G847740
TU965963 other upstream 501593 4567812 ~ 4569190 (-) False G847774
TU965964 other upstream 501593 4567812 ~ 4569190 (-) True G847774
TU966039 other upstream 670310 4736529 ~ 4741588 (-) False G847843
TU966040 other upstream 670310 4736529 ~ 4741588 (-) False G847843

Expression Profile