RNA id: TCONS_00005681


Basic Information

Item Value
RNA id TCONS_00005681
length 224
lncRNA type intronic
GC content 0.49
exon number 1
gene id XLOC_001919
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 8773436 ~ 8773659 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCCGAggacgtttctggagagcgcgaattaCGTAGCAAGAGATCCGTAtatcattatttcattttttaagcgaacgctacgggtggtatgatgccattccttttggTGATTACCGGCTCACCGCTTACCTCtctgtggagggctttcccgccacaaccagtttgtctagttagctcgtcgtgtacattGTTGGACTTGAGACATAGAGAGTGGTTGACCACGAc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005828 lncRNA upstream 57688 8709485 ~ 8715748 (+) True XLOC_001917
TCONS_00005680 lncRNA upstream 122581 8646959 ~ 8650855 (+) True XLOC_001913
TCONS_00003761 lncRNA upstream 364561 8402096 ~ 8408875 (+) True XLOC_001907
TCONS_00003758 lncRNA upstream 510112 8252143 ~ 8263324 (+) True XLOC_001905
TCONS_00005827 lncRNA upstream 735547 8036184 ~ 8037889 (+) True XLOC_001902
TCONS_00005829 lncRNA downstream 348734 9122393 ~ 9125863 (+) True XLOC_001926
TCONS_00005830 lncRNA downstream 872844 9646503 ~ 9661896 (+) False XLOC_001935
TCONS_00005682 lncRNA downstream 875713 9649372 ~ 9661381 (+) False XLOC_001935
TCONS_00005683 lncRNA downstream 875945 9649604 ~ 9661896 (+) False XLOC_001935
TCONS_00005684 lncRNA downstream 875990 9649649 ~ 9661896 (+) True XLOC_001935
TCONS_00003773 mRNA upstream 75649 8688678 ~ 8697787 (+) False XLOC_001916
TCONS_00003774 mRNA upstream 75656 8690936 ~ 8697780 (+) True XLOC_001916
TCONS_00003772 mRNA upstream 85542 8680730 ~ 8687894 (+) True XLOC_001915
TCONS_00003771 mRNA upstream 115752 8656417 ~ 8657684 (+) True XLOC_001914
TCONS_00003770 mRNA upstream 142075 8629275 ~ 8631361 (+) True XLOC_001912
TCONS_00003777 mRNA downstream 73374 8847033 ~ 8858205 (+) True XLOC_001920
TCONS_00003780 mRNA downstream 101536 8875195 ~ 8884205 (+) True XLOC_001922
TCONS_00003781 mRNA downstream 112110 8885769 ~ 8940896 (+) True XLOC_001923
TCONS_00003782 mRNA downstream 194544 8968203 ~ 8975980 (+) False XLOC_001924
TCONS_00003783 mRNA downstream 194565 8968224 ~ 8976823 (+) True XLOC_001924
TCONS_00003759 other upstream 430131 8343188 ~ 8343305 (+) True XLOC_001906
TCONS_00003739 other upstream 1195385 7573316 ~ 7578051 (+) True XLOC_001890
TCONS_00003731 other upstream 1563328 7083771 ~ 7210108 (+) False XLOC_001887
TCONS_00003693 other upstream 3003824 5744923 ~ 5769612 (+) False XLOC_001866
TCONS_00003679 other upstream 3621035 5151349 ~ 5152401 (+) True XLOC_001855
TCONS_00003778 other downstream 88862 8862521 ~ 8868895 (+) True XLOC_001921
TCONS_00003779 other downstream 95809 8869468 ~ 8880126 (+) False XLOC_001922
TCONS_00003791 other downstream 572737 9346396 ~ 9348506 (+) False XLOC_001931
TCONS_00003802 other downstream 952115 9725774 ~ 9725891 (+) True XLOC_001937
TCONS_00003803 other downstream 1139404 9913063 ~ 9913177 (+) True XLOC_001940