RNA id: TU967866


Basic Information

Item Value
RNA id TU967866
length 1640
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G849368
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 6648774 ~ 6650438 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccccccccatacacacacactcacacacccctaCTCTCCTCAGAGGACAATCTCTCGCCCTCCTTAGTGTGGGGCATTCCAACGCCTTCACCTGTTCTACTGGTGACTTACGACAACTTTAAAAAGCAAAATGCTGCTACATTATCTAAAAGTCTcatattttttgtattattattttgtgCACTACAAGAAATTTGAGACCAAACCCGagtgagaaagggaggagagaagagaaagaaaaaaaatgttcTGTTTACTTGCGGTCGTATCTTTTATTGTAAAGCGTTTGAAGTTGAATGGACAAGTCTTAAAGTAACTGGAagcctgatgatgatgatgatgatgatgatgatgtcttTATGTTCATTAGGTCGGTTATGTACTTGTTCATTCCTGTGAggtttatttaaaataaaataaaaaatagatttaaaaaataataataattaaaaaaataattatatgcACAGTTAATGTGGTTCTGTCTTTGTCAAGTGTAGCCCTGACAACGTTTAGAAAATCAGAGGTATCCCGCTATCTGTGTGGACAAAAGGTTCATTAAGATCAGATCTAGAATTGTCATCTGATCGGACGAGTCTcttcaaaataaacattttaatgaATCTGCTAAAGCAACCAGACCAGACAAAACTGTTTGCCATGAATCCAAATCAGAGTGTTGTCCTGCGATGTTGTCGTACACAGTATCACTTACAGTGCAAAGGTCACCCTGGAGAGTACTTGGCGGTCGTTCGTTGATGGGTTGAGGAGAGGGTTTGAATTAACGGAGTTTATACTTCTACACTGATGCGAGAGAGGCTTGATGTTGATGTACAGTAACATAGTTCTGCTTTTAACTGTTCAGACTTCCTCTTTAAATCAAACATTCTTGTCAGCTTCCTGTCCAAGAATGTCAATGCCTGGCACTTAAAATAACTCTGGAGAAAGTACTAAAGTGCTATGAATTTCCTTTTCAAAAATGTTATTTTCTTCCTGTACCGTAGGGGGGAGTTTGGCTAGCCTTGTATCTAAACGGAGTTTACCGTGTTACCAAACAGAAGTGAAACTTCAGGTAGGATGCCATGCTAGAGTTTGGTTGTGGATCCTAGAAATTGTCCTTATggcaaaaaaatgaaaaataagtaGATTTTTGTTTCCGTCTAATCGGTCAGTTTTTTTAGTTTTTGTTCCTTGAGACAGAAGTGCCAATATTGTCTTTTTATTTCTCAAACCTTTTTCTCATGGAGACGACAGCAGGTCACTAACTGAACTGGCCAGTACTTGGTTTGTTTTAATGGGAGCtgctttaaaaataaatacaaataatgatGTAAAGAGTCGAACGTTAGATGAAGAGGTGATGAGATGATTTGTTAATAAATGTATGAACTGAAGATTTAAATGAGACGGTGAGCCTGTACGGTTGTCACGGTTACCCATTGCCCAATAACATtggttgttttttttggggggggggggggggcaaatctGAATGAGGAAGTGGTGGAACCCAGATATGCaatgtaatgtaatatataattgTCTGATTCAGTACTGGTGGCTAAAACCTGTCACTTAGCGAATAATTGTGTAAAGGAAACAAATGCACTGTAAAAGAGATCCTATTggttaaaataaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU967843 lncRNA downstream 21100 6624736 ~ 6627674 (-) True LOC110534837
TU967888 lncRNA downstream 27057 6621498 ~ 6621717 (-) True G849389
TU967884 lncRNA downstream 32115 6615968 ~ 6616659 (-) True G849385
TU967857 lncRNA downstream 54763 6593322 ~ 6594011 (-) True G849360
TU967846 lncRNA downstream 69124 6579038 ~ 6579650 (-) True G849350
TU967909 lncRNA upstream 32499 6682937 ~ 6684189 (-) False G849404
TU967911 lncRNA upstream 32499 6682937 ~ 6684189 (-) False G849404
TU967912 lncRNA upstream 32499 6682937 ~ 6684519 (-) False G849404
TU967913 lncRNA upstream 32499 6682937 ~ 6684519 (-) True G849404
TU967874 lncRNA upstream 39122 6689560 ~ 6690333 (-) True G849375
XM_036989581.1 mRNA downstream 7927 6624263 ~ 6640847 (-) False LOC110534837
XM_036989580.1 mRNA downstream 9001 6624263 ~ 6639773 (-) False LOC110534837
XM_036989579.1 mRNA downstream 191106 6429933 ~ 6457668 (-) True LOC110533291
XR_002474940.2 mRNA downstream 244438 6403226 ~ 6404336 (-) False LOC110533295
XM_021617387.2 mRNA downstream 247355 6399723 ~ 6401419 (-) True znhit3
XM_036989590.1 mRNA upstream 889 6651327 ~ 6724317 (-) False LOC110519104
XM_036989591.1 mRNA upstream 889 6651327 ~ 6724345 (-) False LOC110519104
XM_036989592.1 mRNA upstream 889 6651327 ~ 6741116 (-) False LOC110519104
XM_036989587.1 mRNA upstream 889 6651327 ~ 6741117 (-) False LOC110519104
XM_036989588.1 mRNA upstream 889 6651327 ~ 6741118 (-) False LOC110519104
TU966880 other downstream 826746 5739884 ~ 5822028 (-) True G848524
TU966871 other downstream 923964 5719647 ~ 5724810 (-) True LOC118966693
TU966396 other downstream 1506303 5141877 ~ 5142471 (-) True G848149
TU966062 other downstream 1836592 4810948 ~ 4812182 (-) True G847861
TU966042 other downstream 1907186 4736529 ~ 4741588 (-) True G847843
TU967954 other upstream 131185 6781623 ~ 6787520 (-) False G849438
TU968094 other upstream 364293 7014731 ~ 7015222 (-) True G849536
TU968253 other upstream 430153 7080591 ~ 7082770 (-) False LOC110533297
TU968262 other upstream 480842 7131280 ~ 7132565 (-) False LOC110533297
TU968510 other upstream 790465 7440903 ~ 7443617 (-) False G849864

Expression Profile