RNA id: TU968099


Basic Information

Item Value
RNA id TU968099
length 466
lncRNA type intronic
GC content 0.55
exon number 2
gene id G849538
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 7016531 ~ 7017036 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctctgttgatgtgTGAGGTCCCAGTGGTGCCTGGACTCCAGTCTCTGCTGATGTGAGGTCCCAGTGGTGCCTGGACTCCAGTCTCTGCTGATGTGAGGTCCCAGGGGTGCCTGGACTCCAGTCTCTGCTGATGTGAGTCTGTGTCCTACTGCTTCACACACCACTCAATGTGGTGTTGGCCTCATCCTTGGATGGGGTGAGCCGGAGGAAGAGGGAGACACGCTGAAACACTCACAGATTTACCAAATCAGATTAAATAAGGACCTGCCGTCTCACGTCAACTTCCTTTGGATGGTTCGCTAGCATGTGACCTGTTTTGAACTGgggaccctccctccctgtctcctctctcctgatgATGctctgcaaggagagagacagagagagagacggagagagagatggagagacagggagggagagagagagagacactacgcccactacgcccaggtagtgagcggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU968091 lncRNA downstream 3720 7006443 ~ 7012811 (-) True G849534
TU968087 lncRNA downstream 10267 7002865 ~ 7006264 (-) True LOC118966699
TU968090 lncRNA downstream 10916 7003230 ~ 7005615 (-) True G849533
TU968083 lncRNA downstream 14356 6998606 ~ 7002175 (-) True G849531
TU968080 lncRNA downstream 23467 6992179 ~ 6993064 (-) True G849528
TU968117 lncRNA upstream 40827 7057863 ~ 7058091 (-) True G849550
TU968127 lncRNA upstream 45366 7062402 ~ 7062635 (-) True G849560
TU968259 lncRNA upstream 60926 7077962 ~ 7079503 (-) False G849666
TU968260 lncRNA upstream 61050 7078086 ~ 7106112 (-) True G849666
TU968281 lncRNA upstream 90633 7107669 ~ 7129273 (-) True G849686
XR_005053559.1 mRNA downstream 2349 7007920 ~ 7014182 (-) False LOC118966700
XR_005053561.1 mRNA downstream 2349 7012444 ~ 7014182 (-) False LOC118966700
XR_005053562.1 mRNA downstream 2349 7012444 ~ 7014182 (-) False LOC118966700
XR_005053558.1 mRNA downstream 2349 7012450 ~ 7014182 (-) False LOC118966700
XR_005053560.1 mRNA downstream 2349 7012551 ~ 7014182 (-) True LOC118966700
XM_036989595.1 mRNA upstream 19162 7036198 ~ 7041922 (-) False hsf5
XM_036989596.1 mRNA upstream 20670 7037706 ~ 7041922 (-) True hsf5
XM_036989597.1 mRNA upstream 63555 7080591 ~ 7308250 (-) False LOC110533297
XM_036989598.1 mRNA upstream 63555 7080591 ~ 7308250 (-) False LOC110533297
XM_036989599.1 mRNA upstream 68815 7085851 ~ 7308250 (-) False LOC110533297
TU968094 other downstream 1309 7014731 ~ 7015222 (-) True G849536
TU967954 other downstream 229011 6781623 ~ 6787520 (-) False G849438
TU966880 other downstream 1194503 5739884 ~ 5822028 (-) True G848524
TU966871 other downstream 1291721 5719647 ~ 5724810 (-) True LOC118966693
TU966396 other downstream 1874060 5141877 ~ 5142471 (-) True G848149
TU968253 other upstream 63555 7080591 ~ 7082770 (-) False LOC110533297
TU968262 other upstream 114244 7131280 ~ 7132565 (-) False LOC110533297
TU968510 other upstream 423867 7440903 ~ 7443617 (-) False G849864
TU968513 other upstream 423867 7440903 ~ 7443617 (-) False G849864
TU968514 other upstream 423867 7440903 ~ 7443617 (-) True G849864

Expression Profile