RNA id: TU972009


Basic Information

Item Value
RNA id TU972009
length 2464
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G852828
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 10505744 ~ 10508227 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctgttaTTTTTGGCTCCCCCTATCTCTGCTGTGCCATGCCGAGTGCTCCCTGCGGCAGGGGAAACAGTTAAACATCGCTCAGGGATAAGGATAAGGAACAGTTCCACTTGTGTTCCCCCCTCTCTATATGTTGCTTGTTGCACCCATTTTAAAGTATGTTAGCAGAGCACTGATGTGGTCTCTACTTTACACTGATGTCTGTGGGTTTGCATTGTTAAGGCATCTAAACTGCTGGTTCAGATTTTGGTGAGACAACGGAGGGGAAAGTGAAAATAAGATGGAAGAGATGAAGAAAGTATTTTCATATtgtttccccccaaaaaatggtcTTCCTGCTTTCAGCACAGAAATTCATGGCTAGAAAGAGAACCCACATTCCTAATGTTTGTTTTTAAACAGTATACGGGTTTTTTTTTAAGCCCAAAAAAATCTAAGCAAAGAAGAAATTCAAATGATATACTTATATAATCTCTTTACTATAAGAATAATATACTACCTTTACCATATGATAAAACAAACGCAAAATCCAGACAACATCTTTTGTTTCTTCATTAAATTTCCAAAATGATACAAAAAAATAGACAATGGCTTTTAGGGTGGATGGAAAATGGAAGTATGGCTTAAAACAACACAAGAAAAACAACAACGTAAAAAATGACATGTATAAAAACAACATCTAAACACGGAACATGGTTGACAACCAAATTAAAAAACTGATCGGCACTGTCACAAAATGCAAACATACACACGAAAGGATGTGGAAGAAGCAAAATGTAGAAATTGAGGAGAGATGGTACATTATTAGGTAACATTCGGTAACATTCTGTATCTCCCCTCTTAACTATTTAAACTCTCTGAGCTAAAGTTGATGGGATCATTTTGAGTTTGTAGTAAACATGACATCCGTGACACTCAAGCTGCCGTAAGACCTCTTTAAATGTATAAATATATCTTAAACAATGACTTTGGCAAAATTAAAAGAAACATCACATACATGGATTACtatatacaaaaacacacatcacacgagaagaaaaaaaaaagaaagacaatTGATAAGATTGGATTCAGATATTTTTTTGCTGGGCATCTGAGGATTAGGTCACTTTTACAGTGCTGGGTAATCCACGTATCACCACGTCGACTGGGACACCACTGAACACCTCATGTCGACTCATTAGTCTGTCTATAAAGTGTCTCCCAGTTTGACCTATCTCAGATCCTCAACTGTTGTACGGTAACAAGGTGGAACAAGAGAACCGTTTTGAATGGGCGACCCCATGACCCCAGTGACCCCAGTATCATGGTGAGAACAACAACAAACCAAAAACTATCAAGGAATCATTCATACAAAGAAAAATAACTCACACAATATAGCAAAAGTGAAATGGCGACATCCTTTTAAAACATATGGTGTCCTTCATTGAGATTTCATGgtggatggcagagagagagagagagagaacactttaACAAGAGGGTTTCTAATGTACAGTTACAGGGCACAGCAAGCTTGCGGTCCAATAGACCAACCACACAGTAGAGACACTGTTGGTATCCAGAGCAGGTTCAGGCTCTGCTCTCTAACTCTGACAACCACCTAGGAGCTTGGACACGACCGGTACACTTACAGCCAACATGGAATGAATGGCTGGCTACGTGTCATCATGGGTAAATCACTTGCTTTCTGTGGTGCCGAGCGAGCGCTTCTAGTCGTAGCGATGGAGTTCTCTGCTAggcatgagagggagagaaatgagtaGGCGCTGTTTGCAGCGGCCAAAAGAACTCGAAAGCAGAGAGTTTCTGCAATGGTGCATGGTTAGTGCTACCTAGCGTGTCTTTCTGTGCCTTAGGGTTAGTTAGGGAATGTGGCATCGTCTCTATCCAGCACACTGTAGTACAAAACAAATGTCTAAATGTCTGGTTTGGCTAGTCTTGATTCATGAGTACAGCAATTGTATAAATCTAATTCAGTCTTTACTATTTAACTCACATTTTAATGTCTTCTATCATTCTCAAACAATTTATTAATTTATCTTTTTCAGAttcataaataaaaaaatctctcTAATATTTTCACTTGTGTATATTACACATTGAAGATGGGAAAATACATAGTGTTTTGCACAAAGGTAAAACACTAAATAAAAGGATAAGTCAATCCTCTCCCTTAATAAATAAAACTCATGTTTAGCTGGGTTGGGTTTTCTGGGTAATCTGTGACCTTGTGTTCAACTTGTTGTAAATGCTGCGTTTTcttcttatttattttttctccttTTAAAGTTCAAATGTGATTCCTTTTAAAAAAAAGGGCCTGAGTTACGGGTTCTATTCCTTCAACGCAGGACTGACGAACCAGTCCTAAACTGGAGCCTTGGGTACATGCTGAGATCCACGCCTGAGTCTTTCTTCTCATACCCAAACATCGCTTACATGGGAGGAACGATCATTCCAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU972002 lncRNA downstream 3930 10501135 ~ 10501814 (-) True G852823
TU972000 lncRNA downstream 6477 10498716 ~ 10499267 (-) True G852821
TU971999 lncRNA downstream 10227 10495191 ~ 10495517 (-) True G852820
TU971995 lncRNA downstream 15431 10489591 ~ 10490313 (-) True G852816
TU971986 lncRNA downstream 31145 10474259 ~ 10474599 (-) True G852807
TU972010 lncRNA upstream 1243 10509470 ~ 10509995 (-) True G852829
TU972031 lncRNA upstream 59688 10567915 ~ 10568441 (-) True G852848
TU972040 lncRNA upstream 74992 10583219 ~ 10583635 (-) True G852857
TU972074 lncRNA upstream 104689 10612916 ~ 10613419 (-) True G852888
TU972076 lncRNA upstream 105645 10613872 ~ 10614130 (-) True G852890
XM_036989677.1 mRNA downstream 350502 10146911 ~ 10155242 (-) False LOC110533324
XM_036989680.1 mRNA downstream 350502 10146911 ~ 10155242 (-) True LOC110533324
XM_021617431.2 mRNA downstream 351797 10146911 ~ 10153947 (-) False LOC110533324
XM_021617432.2 mRNA downstream 351797 10146911 ~ 10153947 (-) False LOC110533324
XM_021617430.2 mRNA downstream 351799 10146911 ~ 10153945 (-) False LOC110533324
XR_005034343.1 mRNA upstream 39344 10547571 ~ 10549301 (-) False LOC118936914
XR_005034341.1 mRNA upstream 39346 10547573 ~ 10549301 (-) False LOC118936914
XR_005034342.1 mRNA upstream 39346 10547573 ~ 10549301 (-) False LOC118936914
XR_005034344.1 mRNA upstream 39346 10547573 ~ 10549301 (-) False LOC118936914
XR_005034345.1 mRNA upstream 39346 10547573 ~ 10549301 (-) False LOC118936914
TU971979 other downstream 43094 10462256 ~ 10462650 (-) True G852802
TU969585 other downstream 2073703 8431531 ~ 8432041 (-) True G850763
TU969056 other downstream 2759120 7741302 ~ 7746624 (-) True G850323
TU968513 other downstream 3062127 7440903 ~ 7443617 (-) False G849864
TU972516 other upstream 496882 11005109 ~ 11005658 (-) True G853244
TU973046 other upstream 934025 11442252 ~ 11442590 (-) True G853740
TU973334 other upstream 1073459 11581686 ~ 11583188 (-) True LOC110533345
TU973362 other upstream 1107029 11615256 ~ 11620922 (-) True G854016
TU973775 other upstream 1276893 11785120 ~ 11785853 (-) True G854402

Expression Profile