RNA id: TU973046



Basic Information


Item Value
RNA id TU973046
length 339
RNA type TUCP
GC content 0.42
exon number 1
gene id G853740
representative True

Chromosome Information


Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 11442252 ~ 11442590 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCCTGaaactatgtaatatggtgtctcctattgccctggaagaggtggtcttcactgatatgTCCCTGaaactatgtaatatggtgtctcctattgccctggaagaggtggtcttcactgatatatccctgaaactatgtaatatggtgtctcctattgccctggaagaggtggtcttcactgatatatCTCTTaaactatgtaatatggtgtctcctattgccctggaagaggtggtcttcactgatatatccctgaaactatgtaatatggtgtctcctattgccctggaagaggtggtcttcactgatatatccctgaaactatgtaatatggtgt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU973024 lncRNA downstream 13546 11428381 ~ 11428706 (-) True G853718
TU973022 lncRNA downstream 14548 11427325 ~ 11427704 (-) True G853716
TU973016 lncRNA downstream 24707 11417330 ~ 11417545 (-) True G853710
TU973007 lncRNA downstream 29427 11412589 ~ 11412825 (-) True G853701
TU972998 lncRNA downstream 35331 11406632 ~ 11406921 (-) True G853692
TU973110 lncRNA upstream 56647 11499237 ~ 11499601 (-) True G853793
TU973142 lncRNA upstream 76343 11518933 ~ 11519224 (-) True G853824
TU973146 lncRNA upstream 77860 11520450 ~ 11520649 (-) True G853828
TU973306 lncRNA upstream 86276 11528866 ~ 11531054 (-) True G853967
TU973307 lncRNA upstream 88602 11531192 ~ 11532228 (-) True G853968
XR_005034347.1 mRNA downstream 350978 11090021 ~ 11091274 (-) True LOC118936915
XM_021617449.2 mRNA downstream 412741 11026087 ~ 11029511 (-) False bod1
XM_036989695.1 mRNA downstream 412741 11026087 ~ 11029511 (-) False bod1
XM_021617448.2 mRNA downstream 448459 10988789 ~ 10993793 (-) True LOC110533336
XM_021617439.2 mRNA downstream 592419 10760682 ~ 10849833 (-) True LOC110533330
XM_021617454.2 mRNA upstream 24791 11467381 ~ 11474701 (-) True LOC110533343
XM_021617455.2 mRNA upstream 119346 11561936 ~ 11564213 (-) True LOC110533344
XM_021617456.2 mRNA upstream 124903 11567493 ~ 11583280 (-) False LOC110533345
XM_021617457.2 mRNA upstream 124903 11567493 ~ 11583280 (-) False LOC110533345
XM_036989700.1 mRNA upstream 124903 11567493 ~ 11583280 (-) False LOC110533345
TU972516 other downstream 436594 11005109 ~ 11005658 (-) True G853244
TU971979 other downstream 979602 10462256 ~ 10462650 (-) True G852802
TU969585 other downstream 3010211 8431531 ~ 8432041 (-) True G850763
TU969056 other downstream 3695628 7741302 ~ 7746624 (-) True G850323
TU968513 other downstream 3998635 7440903 ~ 7443617 (-) False G849864
TU973334 other upstream 139096 11581686 ~ 11583188 (-) True LOC110533345
TU973362 other upstream 172666 11615256 ~ 11620922 (-) True G854016
TU973775 other upstream 342530 11785120 ~ 11785853 (-) True G854402
TU974134 other upstream 851513 12294103 ~ 12294536 (-) True G854734
TU974511 other upstream 1138803 12581393 ~ 12611178 (-) True G855079

Expression Profile


TU973046 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
End of interactive chart.

TU973046 Expression in each Bioproject

Bar chart with 7 bars.
TU973046 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
End of interactive chart.