RNA id: TU978774


Basic Information

Item Value
RNA id TU978774
length 488
lncRNA type intronic
GC content 0.44
exon number 2
gene id G858928
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 15820458 ~ 15821201 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtatagtgtgtgtgtggcaggcttacaatgatggctaaaaacaacatttgagagtgcgctgaccctggtgctagagggggtacgcagctggaggttgaatgtttgaaggggtacgggactatgaaaagtttgggaaccactgccttaggagaaccctttttgggttccatgtataaccctttgtggaaagggttttacatggaaccctaAAGGGTTCtagctggaaccaaaaagggttcttcaaagggttcttctatggggacagatgAAGAACCCTcataggttctagatagcaccgtttttttttgtgtggacaATGTTTAAGAGTTTCTTACTGGACAATTCCAGGTAGTCATTCCCTGTTCCAGTCCATTTTCTtacatttggtgcctaatgaaatAAACATGACGACGTACTTTTGTTAGCAATAGCGCACCGAGTTGCACTAGTTATGAGAGGCTTACCGAAGACTCAGGACAGGAACAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU978672 lncRNA downstream 140450 15679616 ~ 15680008 (-) True G858832
TU978673 lncRNA downstream 145203 15674751 ~ 15675255 (-) True G858833
TU978671 lncRNA downstream 146524 15673536 ~ 15673934 (-) True G858831
TU978661 lncRNA downstream 158327 15660843 ~ 15662131 (-) True G858823
TU978647 lncRNA downstream 188063 15631851 ~ 15632395 (-) True G858811
TU978793 lncRNA upstream 21480 15842681 ~ 15843627 (-) True G858945
TU978811 lncRNA upstream 48335 15869536 ~ 15900725 (-) True G858963
TU978850 lncRNA upstream 93789 15914990 ~ 15919870 (-) True G859002
TU978885 lncRNA upstream 172102 15993303 ~ 16047932 (-) True G859035
TU979152 lncRNA upstream 300246 16121447 ~ 16125648 (-) True G859272
NM_001160665.1 mRNA downstream 321322 15491003 ~ 15499136 (-) True sar1a
XM_021617525.2 mRNA downstream 631576 15187394 ~ 15188882 (-) True LOC110533385
XM_036989743.1 mRNA downstream 649263 15157675 ~ 15171195 (-) True LOC110534908
XM_021617523.2 mRNA downstream 666185 15140812 ~ 15154273 (-) False LOC110533384
XM_036989794.1 mRNA upstream 197337 16018538 ~ 16055834 (-) False LOC110534856
XM_036989795.1 mRNA upstream 197337 16018538 ~ 16056867 (-) False LOC110534856
XM_036989793.1 mRNA upstream 197337 16018538 ~ 16057113 (-) False LOC110534856
XM_036989792.1 mRNA upstream 197337 16018538 ~ 16057117 (-) False LOC110534856
XM_021619791.2 mRNA upstream 197337 16018538 ~ 16057861 (-) False LOC110534856
TU977732 other downstream 702429 15117422 ~ 15118029 (-) True G858015
TU977127 other downstream 1247554 14571960 ~ 14572904 (-) True LOC110533380
TU976529 other downstream 1610076 14203533 ~ 14210382 (-) True G856863
TU976538 other downstream 1613242 14205272 ~ 14207216 (-) True G856872
TU976590 other downstream 1635484 14184287 ~ 14184974 (-) True G856922
TU978918 other upstream 197339 16018540 ~ 16037823 (-) True LOC110534856
TU979195 other upstream 320083 16141284 ~ 16142173 (-) False LOC110533421
TU979193 other upstream 320147 16141348 ~ 16142737 (-) False LOC110533421
TU979513 other upstream 635347 16456548 ~ 16456847 (-) True G859594
TU981078 other upstream 1701060 17522261 ~ 17545476 (-) True LOC110533434

Expression Profile