RNA id: TU994450


Basic Information

Item Value
RNA id TU994450
length 223
lncRNA type intronic
GC content 0.42
exon number 1
gene id G873511
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 27683641 ~ 27683863 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctcggccaaacacaaagaaatacaaaacatagaatgcccaccccacatcacaccctgacctcaccaaatagagaaataaaacggctctctaaggtcagggcgtgacagtttgtGTGTTGAACAGTGTTGAAATACTCATACCTTCAACTTCGACAGATAAATAATGGCCGAACTGCAACTGACATGCAGCTCTTAAAAACCTTTGACCAAAAGAGTAAATACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU994447 lncRNA upstream 5537 27677801 ~ 27678104 (+) True G873508
TU994443 lncRNA upstream 8993 27674279 ~ 27674648 (+) True G873504
TU994438 lncRNA upstream 16209 27667148 ~ 27667432 (+) True G873499
TU994436 lncRNA upstream 18463 27663978 ~ 27665178 (+) True G873497
TU994435 lncRNA upstream 26177 27657076 ~ 27657464 (+) True G873496
TU994453 lncRNA downstream 8660 27692523 ~ 27692780 (+) True G873514
TU994454 lncRNA downstream 10293 27694156 ~ 27694544 (+) True G873515
TU994456 lncRNA downstream 11888 27695751 ~ 27696000 (+) True G873517
TU994458 lncRNA downstream 15936 27699799 ~ 27700593 (+) True G873519
TU994460 lncRNA downstream 19104 27702967 ~ 27703189 (+) True G873521
XM_021617945.2 mRNA upstream 186904 27409651 ~ 27496737 (+) False ppm1e
XM_021617941.2 mRNA upstream 286923 27366588 ~ 27396718 (+) True LOC110533582
XM_036989995.1 mRNA upstream 286924 27366588 ~ 27396717 (+) False LOC110533582
XM_021617944.2 mRNA upstream 353057 27309669 ~ 27330584 (+) False LOC110533584
XM_021617957.2 mRNA downstream 196529 27880392 ~ 27888907 (+) True LOC110533592
XM_021617958.2 mRNA downstream 307817 27991680 ~ 28004015 (+) False LOC110533593
XM_036990004.1 mRNA downstream 307817 27991680 ~ 28004015 (+) False LOC110533593
XM_036990002.1 mRNA downstream 307925 27991788 ~ 28004015 (+) False LOC110533593
XM_036990003.1 mRNA downstream 307925 27991788 ~ 28004015 (+) True LOC110533593
TU992619 other upstream 186769 27492733 ~ 27496872 (+) False ppm1e
TU992620 other upstream 186769 27492733 ~ 27496872 (+) False ppm1e
TU992621 other upstream 186769 27492733 ~ 27496872 (+) True ppm1e
TU992474 other upstream 414847 27261756 ~ 27268794 (+) True ap2b1
TU992259 other upstream 824538 26853778 ~ 26859103 (+) True LOC110534876
TU995068 other downstream 406043 28089906 ~ 28117360 (+) True G874108
TU995148 other downstream 478964 28162827 ~ 28170253 (+) False LOC110533598
TU995448 other downstream 872677 28556540 ~ 28557644 (+) True G874438
TU995386 other downstream 893589 28577452 ~ 28584415 (+) True G874378
TU995526 other downstream 1043911 28727774 ~ 28738905 (+) True G874510

Expression Profile