RNA id: TU997105


Basic Information

Item Value
RNA id TU997105
length 264
lncRNA type intronic
GC content 0.39
exon number 1
gene id G876014
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 29702245 ~ 29702508 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGTAGGGAGTCAAAAACAGGTAGTTAAACCTGTTTGTGAGGTATTAGGAGTTGGAACCTGCATAAGTAAAGTGGAAATATCGTGTTTTCAAATGACTAGGGCCTTCCAAACCCTTACGACAATTCAGCTTAACAGTCCTCTTTTTCAATATCATTCTTGGGATTTTCCTTGGTTGCACTGAGCAGATTTTGTAGGACTAAATTGTTAATTAGGGACTCATTGCCTCAAGACTCAAACTCACACCCCTCGTATTATTTTAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU997063 lncRNA upstream 37918 29664122 ~ 29664327 (+) True G875972
TU997053 lncRNA upstream 42945 29658938 ~ 29659300 (+) True G875962
TU997046 lncRNA upstream 48085 29653888 ~ 29654160 (+) True G875955
TU996819 lncRNA upstream 197894 29503878 ~ 29504351 (+) True G875740
TU996815 lncRNA upstream 204444 29497592 ~ 29497801 (+) True G875736
TU997107 lncRNA downstream 2661 29705169 ~ 29705437 (+) True G876016
TU997109 lncRNA downstream 5954 29708462 ~ 29708745 (+) True G876018
TU997115 lncRNA downstream 11194 29713702 ~ 29713907 (+) True G876024
TU997116 lncRNA downstream 12105 29714613 ~ 29714864 (+) True G876025
TU997123 lncRNA downstream 18773 29721281 ~ 29725221 (+) True G876032
XR_005053611.1 mRNA upstream 72745 29586452 ~ 29629500 (+) True LOC118966731
XM_021618008.2 mRNA upstream 176682 29506273 ~ 29525563 (+) True gemin5
XM_021618009.2 mRNA upstream 176683 29506273 ~ 29525562 (+) False gemin5
XR_005034351.1 mRNA upstream 462052 29231551 ~ 29240193 (+) False LOC118936921
XM_036990026.1 mRNA upstream 972878 28699778 ~ 28729367 (+) True rars1
XM_021618017.2 mRNA downstream 101764 29804272 ~ 29835099 (+) False LOC110533618
XM_036990030.1 mRNA downstream 141513 29844021 ~ 29881548 (+) False LOC100653448
XM_036990031.1 mRNA downstream 162692 29865200 ~ 29881548 (+) False LOC100653448
XM_036990032.1 mRNA downstream 166088 29868596 ~ 29881548 (+) False LOC100653448
XR_005053616.1 mRNA downstream 186791 29889299 ~ 29900576 (+) False LOC110533623
TU996858 other upstream 119715 29581126 ~ 29582530 (+) True G875776
TU996837 other upstream 154970 29546639 ~ 29547275 (+) True G875756
TU995929 other upstream 872081 28829772 ~ 28830164 (+) True G874876
TU995526 other upstream 963340 28727774 ~ 28738905 (+) True G874510
TU995386 other upstream 1117830 28577452 ~ 28584415 (+) True G874378
TU997196 other downstream 216768 29919276 ~ 29980630 (+) False LOC110533619
TU997180 other downstream 318133 30020641 ~ 30050053 (+) False G876079
TU997186 other downstream 318583 30021091 ~ 30022290 (+) False LOC110533629
TU997187 other downstream 318583 30021091 ~ 30022290 (+) True LOC110533629
TU997763 other downstream 1045998 30748506 ~ 30755656 (+) False LOC110533640

Expression Profile