RNA id: TU997107


Basic Information

Item Value
RNA id TU997107
length 269
lncRNA type intronic
GC content 0.40
exon number 1
gene id G876016
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 29705169 ~ 29705437 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCATTTACTGATTAATGACAGGATGCAGTCGACACACTTTACTTTATACATAATAtttcctccccacacacacatgatTTGCTAGGAACAGCCATCAGATGAGTAGACCATTAAGAGGGTACATTGAAGTTAATTAATGATCACTCAGCCTGGTAAAATGGGCCAATGTTTTTACCTCTCTCTGCTTTTAGCCAAATTTGTGCTTGATTGCAAATGCATCATGGACCGTTACTTATAAAGACTGTGAGTGCAGAACGAGAGATACGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU997105 lncRNA upstream 2661 29702245 ~ 29702508 (+) True G876014
TU997063 lncRNA upstream 40842 29664122 ~ 29664327 (+) True G875972
TU997053 lncRNA upstream 45869 29658938 ~ 29659300 (+) True G875962
TU997046 lncRNA upstream 51009 29653888 ~ 29654160 (+) True G875955
TU996819 lncRNA upstream 200818 29503878 ~ 29504351 (+) True G875740
TU997109 lncRNA downstream 3025 29708462 ~ 29708745 (+) True G876018
TU997115 lncRNA downstream 8265 29713702 ~ 29713907 (+) True G876024
TU997116 lncRNA downstream 9176 29714613 ~ 29714864 (+) True G876025
TU997123 lncRNA downstream 15844 29721281 ~ 29725221 (+) True G876032
TU997124 lncRNA downstream 21032 29726469 ~ 29726758 (+) True G876033
XR_005053611.1 mRNA upstream 75669 29586452 ~ 29629500 (+) True LOC118966731
XM_021618008.2 mRNA upstream 179606 29506273 ~ 29525563 (+) True gemin5
XM_021618009.2 mRNA upstream 179607 29506273 ~ 29525562 (+) False gemin5
XR_005034351.1 mRNA upstream 464976 29231551 ~ 29240193 (+) False LOC118936921
XM_036990026.1 mRNA upstream 975802 28699778 ~ 28729367 (+) True rars1
XM_021618017.2 mRNA downstream 98835 29804272 ~ 29835099 (+) False LOC110533618
XM_036990030.1 mRNA downstream 138584 29844021 ~ 29881548 (+) False LOC100653448
XM_036990031.1 mRNA downstream 159763 29865200 ~ 29881548 (+) False LOC100653448
XM_036990032.1 mRNA downstream 163159 29868596 ~ 29881548 (+) False LOC100653448
XR_005053616.1 mRNA downstream 183862 29889299 ~ 29900576 (+) False LOC110533623
TU996858 other upstream 122639 29581126 ~ 29582530 (+) True G875776
TU996837 other upstream 157894 29546639 ~ 29547275 (+) True G875756
TU995929 other upstream 875005 28829772 ~ 28830164 (+) True G874876
TU995526 other upstream 966264 28727774 ~ 28738905 (+) True G874510
TU995386 other upstream 1120754 28577452 ~ 28584415 (+) True G874378
TU997196 other downstream 213839 29919276 ~ 29980630 (+) False LOC110533619
TU997180 other downstream 315204 30020641 ~ 30050053 (+) False G876079
TU997186 other downstream 315654 30021091 ~ 30022290 (+) False LOC110533629
TU997187 other downstream 315654 30021091 ~ 30022290 (+) True LOC110533629
TU997763 other downstream 1043069 30748506 ~ 30755656 (+) False LOC110533640

Expression Profile