RNA id: TU1001248


Basic Information

Item Value
RNA id TU1001248
length 2330
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G879846
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 32934196 ~ 32936615 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTTTataactttttattatttttttggaCAAATATATATGAATGTTTAACTCTTAAGGAGACAGTATTTGGAGAATTCTTTACAGAAAATGAACTCTCCTAAATAGACAGAAAACCTAGGAAATCATCATAAAACATCTACATGATAGAACTAACCATTTCCATTTGTGCCAAGGAAGAGAATGATAACTTATTCATTGACAGTGAATTGATGCACGTGATTCTTTAAATTCAGTCCAATGTTATTTGGTGCTGACAAAAATAAAAGTTATTTCAAAAAGCCTGATGGGACTGTGTCATTTTCAGACATCTGAATTCATATGGTTCATTGGGTTGACTGTTAGTTATGCATAAAGGCACACACGCATTGGTAACCCGCAGGTGAGCATTGCTATTTTTGGCAAGACATTGGTCCCATTAGGCAGTACAATTATCCAAACAACTTAatcaaacaaaaaatatatacgcTTGCAGGAAAACAAATAAAATGATCAAAATATTTAGATCATTCATGTATGCAGGGAAATGTCTTCTAGTAAGTTAAAAACTGGATTGAGACCTAAATTAGGTTGGATATTTACTCAAAGATACAGTGGGTCAGCAGTATAGGACACCAACTCAGAAACCTGCTTTATGCTAATGAGAGCTTGAGGGAACACCAACGTTTTACAGAGGATGAAGTTCAGAAAGAGACCTGGTCTCCTGCTGTATGAAACCCTGGAGGCTTCTCTTTCCCTGCCTGAAGGTACTCTCCCTCCGGGAAAATGGTAATATGACAAGGAGCCTTAGGAGGGTTTCAATGTTACTAAAGCTCCTAATGTCTGATGCCTTCAGAGTGTCGAGCACAGTGGCTGGAAGATACCCAGACATGGGATCCAACCACTTCTCTCTCCAAGACTTCATCTCTGTGTGGAGTGAGGCCATGTCAGGCATGTCATCTTTATACACGCGGAAAAGGTGGGCATTTACACTGCTGTTTTCCACCTTTGACATGGCATAAGGCACAATCTCCAGGCACCTCAGGGTACTGAGGACCTTCTCTGTGAAGAGCTCACTGACCTCAACAATGGAGTGCTCTACCACTTTCTGACTCACCGCCATTTTGTAAAACTGACTCAGGGGTTCTAGTAGCCCAGAGTGCAACAGCGTTATCTGCAGCTTGGAAGCTAAAGCGACAGCTTCCTCATACCAGGCCTTATGATGTGTGTCGATATCGCTCTTCAATTCATTGAGGGAAGTTAGGAGGTCAGGCAAGCTATTCATAGCTAGCAACACATCTAGAGGTTTGCCCTGAAGAGATTGGCTCAGCTTTTTGGTCAAACTCAGGACATTCTTCAGCACAACAGCCGAGAAGATGAACTCAAAACTTCTGACTTTATTGAAGTAAAGCAGTGCTTGGCCACTTCCTGAGCTACTCTCCTCACTTTTCTGCTCATTCAAGCACAGCATCACTACCTCAAGAAGCTCTACCATCAACTCATGCATTTCATGACTTTTCTCCCAGTTCTTAATAAGCTTGTCCCTATGCTCATTACCCTTCCCCTCATCATGTTGGAACATGGCAATGATCATGTCCTCCAGTTTGGTCTGTCGTTCTGTGTCCTCTGTGAGCCATTGTAACATGTTTTCTACAGACGCTGCACAGTCTGCTGCTGCCACTGCAGGAGATGACCTGGCTAGCCACACATTCAGAGAGAGAGCAGCGCTGACTGTTCGCATGGCCAGGGGGTATTTCTGGGATATTACAGCAGAAACAGCCCTCATCTGAGACCCTACCTCACCTACACTTAGCAAAGCTTGCCCTCTACAGTACTCCATGTTGAGCCCCAATTTCTCTGATAAGGCTGTTTCAATAGCATCAGCCAAGACAGCAGTGTCCTGGCTGAATGGGATGAAAGCTACAGTCTCCTCGCACTGAGTGTCCTGTTTTTCCAAGTACCTGATGCACAGGGGGACGTAGAGCTGTCCCTCGATCTCAACTGCCCGTTCCGTTATTATTGTAAAGAACTGTGAGTCCCAGAGTTCCTTGAGGATTTCCTCACGCACAGGTGGGTCGTAGAAAGACATGGCCTGCTTCTGACCTATGACCCCATCCTCTACTATCACAATACTGTCCTCTGCCTTCACGCCGTCCTCGGCTAACACAATGTCCACTGCTTTTACATCGTCCTCTGCAAACATGACTTCCTCTGTTATCACGCAGACTTCTACTTTCACATAGTACTCTGCCGCCTCCTCTGCCTTCAGCTTTCCTGCAGGGAGTTGATCTGACGTACCAGCTTGGTGTTCCTCAACTGCCTGCTCATGTCTTCCATCAGGGTTTACATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1001228 lncRNA upstream 31527 32876245 ~ 32902669 (+) True G879832
TU1001227 lncRNA upstream 54742 32876245 ~ 32879454 (+) False G879832
TU1001182 lncRNA upstream 117016 32816949 ~ 32817180 (+) True G879788
TU1000117 lncRNA upstream 145776 32788189 ~ 32788420 (+) True G878792
TU1000042 lncRNA upstream 151365 32782456 ~ 32782831 (+) True G878720
TU1001280 lncRNA downstream 9830 32946445 ~ 32946665 (+) True G879877
TU1001282 lncRNA downstream 15424 32952039 ~ 32952309 (+) True G879879
TU1001255 lncRNA downstream 24260 32960875 ~ 32962613 (+) True G879853
TU1001243 lncRNA downstream 47030 32983645 ~ 32990813 (+) True G879844
TU1001240 lncRNA downstream 104285 33040900 ~ 33045499 (+) True LOC110533671
XM_021618096.2 mRNA upstream 154264 32639570 ~ 32779932 (+) False LOC110533664
XM_021618097.2 mRNA upstream 154264 32639572 ~ 32779932 (+) True LOC110533664
XM_021618094.2 mRNA upstream 299101 32599927 ~ 32635095 (+) False LOC110533663
XM_036990084.1 mRNA downstream 72772 33009387 ~ 33041014 (+) False LOC110533671
XM_021619830.2 mRNA downstream 124796 33061411 ~ 33063183 (+) True LOC110534913
XM_021618110.2 mRNA downstream 194228 33130843 ~ 33140211 (+) False LOC110533672
XM_021618121.2 mRNA downstream 531749 33468364 ~ 33491755 (+) False samsn1b
XM_021618122.2 mRNA downstream 531749 33468364 ~ 33491755 (+) False samsn1b
TU999098 other upstream 1611596 31241810 ~ 31322600 (+) True LOC110534883
TU999056 other upstream 1728778 31205083 ~ 31205418 (+) True G877809
TU997763 other upstream 2178540 30748506 ~ 30755656 (+) False LOC110533640
TU997764 other upstream 2178583 30748506 ~ 30755613 (+) True LOC110533640
TU997187 other upstream 2911906 30021091 ~ 30022290 (+) True LOC110533629
TU1001241 other downstream 45251 32981866 ~ 33045499 (+) False LOC110533671
TU1001378 other downstream 194530 33131145 ~ 33134914 (+) True LOC110533672
TU1001481 other downstream 364150 33300765 ~ 33301738 (+) True G880069
TU1001972 other downstream 1107879 34044494 ~ 34047678 (+) False LOC110533688
TU1001973 other downstream 1107879 34044494 ~ 34047724 (+) True LOC110533688

Expression Profile