RNA id: TU1003030


Basic Information

Item Value
RNA id TU1003030
length 233
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G881499
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 34363766 ~ 34363998 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCACAGGTAGCTCTACGATAGTGTCAACTTTCAAATGTCTGCCCACTGAAGTGGCTGTGACCATGACAGCTGATATGTTACAACATTAACACGTATGACCTTTAGCATTACAGCACTGTGGCTCCCTCTATTGGCCCTAATGGAGGAAACCCAGAATAAGCACTGTAGAACGTTTCCATATGAATTAGAGTTGATATAACATGATTTTGGGCATAATTCTAGTCCTCTGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1003018 lncRNA upstream 30300 34333060 ~ 34333466 (+) True G881488
TU1003016 lncRNA upstream 31717 34331730 ~ 34332049 (+) True G881486
TU1003010 lncRNA upstream 35488 34322946 ~ 34328278 (+) True G881480
TU1002976 lncRNA upstream 95396 34267868 ~ 34268370 (+) True G881449
TU1002930 lncRNA upstream 151198 34212289 ~ 34212568 (+) True G881409
TU1003029 lncRNA downstream 715 34364713 ~ 34365944 (+) True G881498
TU1003036 lncRNA downstream 30021 34394019 ~ 34396839 (+) True LOC110533701
TU1003037 lncRNA downstream 33527 34397525 ~ 34397781 (+) True G881504
TU1003040 lncRNA downstream 35062 34399060 ~ 34399356 (+) True G881507
TU1003067 lncRNA downstream 130557 34494555 ~ 34562820 (+) True G881531
XM_021618149.2 mRNA upstream 41234 34299393 ~ 34322532 (+) False LOC110533694
XM_021618153.2 mRNA downstream 2054 34366052 ~ 34377940 (+) False LOC110533696
XM_021618155.2 mRNA downstream 2055 34366053 ~ 34377211 (+) False LOC110533696
XM_021618154.2 mRNA downstream 2056 34366054 ~ 34377211 (+) False LOC110533696
XM_036990104.1 mRNA downstream 3670 34367668 ~ 34377211 (+) True LOC110533696
XM_021617187.2 mRNA downstream 16237 34380235 ~ 34387056 (+) False med31
TU1001973 other upstream 316042 34044494 ~ 34047724 (+) True LOC110533688
TU1001972 other upstream 316088 34044494 ~ 34047678 (+) False LOC110533688
TU1001481 other upstream 1062028 33300765 ~ 33301738 (+) True G880069
TU1001378 other upstream 1228852 33131145 ~ 33134914 (+) True LOC110533672
TU1001241 other upstream 1318267 32981866 ~ 33045499 (+) False LOC110533671
TU1003053 other downstream 70544 34434542 ~ 34435418 (+) True hsd20b2
TU1003066 other downstream 73342 34437340 ~ 34443357 (+) True LOC110533705
TU1003062 other downstream 94796 34458794 ~ 34470378 (+) True rnasekb
TU1003061 other downstream 122822 34486820 ~ 34488714 (+) True LOC110534915
TU1003072 other downstream 125822 34489820 ~ 34494101 (+) True G881536

Expression Profile