RNA id: TU1003586


Basic Information

Item Value
RNA id TU1003586
length 514
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G882012
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 34807294 ~ 34807807 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTTCACccctcacacacatgcatgtttATGATAGTAAGTGTGTCTGCAACTTCAGGATGCTTTGAGTTGCTGAGCAGGTGTCGTGGAAatgtcctctatttaccaaatcatgagagcaaaccacacacaagtcagagttagttatcaaagtccatctttaattatatgacctctatcacaaccctgtgactctcagatcaattcagtgtctatcaatgaattctctgagagtcccttacacattgcaactgagatcctttatagcagaGACACACATATCCAGACAGCATAggcataatttatcgttcagctttgtctcctaaactatgtgcttttctcaaactcagaaccataaacaaatcctccatatcaacagccagatatcaaatccatcctatcttgacaagatcacagagacacactgactggcacacagacattgtggagccaagagatacacgcttgacctctcccctctctccggcccaagcaacttagtcttgacatagaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1003569 lncRNA downstream 21007 34786086 ~ 34786287 (-) True G881995
TU1003491 lncRNA downstream 66161 34739323 ~ 34741133 (-) True G881919
TU1003526 lncRNA downstream 119946 34687065 ~ 34687348 (-) True G881953
TU1003525 lncRNA downstream 120918 34686160 ~ 34686376 (-) True G881952
TU1003523 lncRNA downstream 124893 34682175 ~ 34682401 (-) True G881950
TU1003594 lncRNA upstream 1459 34809266 ~ 34815933 (-) True G882019
TU1003610 lncRNA upstream 26856 34834663 ~ 34834918 (-) True G882031
TU1003622 lncRNA upstream 38528 34846335 ~ 34846847 (-) True G882043
TU1003629 lncRNA upstream 44278 34852085 ~ 34852295 (-) True G882050
TU1003630 lncRNA upstream 44606 34852413 ~ 34852678 (-) True G882051
XM_036989345.1 mRNA downstream 208287 34597247 ~ 34599007 (-) False LOC110534894
XM_036990111.1 mRNA downstream 211031 34589717 ~ 34596263 (-) False LOC110533714
XM_036990113.1 mRNA downstream 211031 34592911 ~ 34596263 (-) False LOC110533714
XM_036990112.1 mRNA downstream 211771 34589717 ~ 34595523 (-) False LOC110533714
XM_021618172.2 mRNA downstream 278517 34521230 ~ 34528777 (-) True ap4m1
XM_021618186.2 mRNA upstream 83252 34891059 ~ 34893957 (-) False LOC110533718
XR_005034353.1 mRNA upstream 117124 34924931 ~ 34925923 (-) True LOC118936924
XM_021618189.2 mRNA upstream 146044 34953851 ~ 34967269 (-) True si:ch211-284e13.4
XM_021618191.2 mRNA upstream 172375 34980182 ~ 34989463 (-) True si:ch211-284e13.6
XM_036990116.1 mRNA upstream 184550 34992357 ~ 35012867 (-) True gucy2d
TU1003456 other downstream 208619 34598367 ~ 34598675 (-) True LOC110534894
TU1003400 other downstream 211112 34592322 ~ 34596182 (-) True LOC110533714
TU1003325 other downstream 390033 34413063 ~ 34417261 (-) True G881778
TU1002672 other downstream 833982 33939435 ~ 33973312 (-) True LOC110533687
TU1002671 other downstream 834054 33939435 ~ 33973240 (-) False LOC110533687
TU1003687 other upstream 85172 34892979 ~ 34893928 (-) True LOC110533718
TU1004252 other upstream 495107 35302914 ~ 35304055 (-) True G882578
TU1004213 other upstream 513007 35320814 ~ 35321706 (-) True G882539
TU1004310 other upstream 619442 35427249 ~ 35428208 (-) True G882631
TU1004715 other upstream 790510 35598317 ~ 35599085 (-) True G882971

Expression Profile