RNA id: TU1003871


Basic Information

Item Value
RNA id TU1003871
length 2159
RNA type TUCP
GC content 0.42
exon number 1
gene id G882265
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 35161348 ~ 35163506 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGTTTGAATATCCAATGTTTTTGCTGACTATGTACCATCCAACACATTCTCTTGATGCGAAAACTCCATATTCAATGCCATAATGTAAAACAAACAAATTGTTGATCATGATGATTTGTGTATGCCAACATCAGCAGCATAGGTGTTTTAATTGTatacaaaaatgtattgtttaatTATATAACATTTTATAAATGAGGCACCAATTGGGCAGAAAGGAAAGCAAGGCCTCAGTTTAACTTTGAATTAAGTGTCTGGGTCATTGTATCATTATTTAGTACAAGTTAAACAGAACAATTCATTAACCATGTAAATGTATCGTGTGTAAAATAAAGTAACTAGCTAAATCTAATATTCTTAGAGTATAATAGTCTTCTTACATTAGAAATTGCATTATATCCATCAGTAAAGACCTGTGTCACATATACATCACCATACAGTGAGATACAAGACAGACAAGAAATCTATAGGGTATAGGAGACCTGCACCTCATCCTAAGGCAGTGTGAGGGCTGAAACCGAGATCTGGCTTCTTCATTTTGTTCTAACCAAGCAAAGCCCACAGCAGACTTACTGAATTAAATCACAACTGCTTTGCCACAAACTGTGGCATGTTTTGGCATGTTCATGTCCCATGGCTTACTAAAAAATAGAATACATACGTGTAACAAGAAATGGTTAGGGTAAAACACAAAACACAGTTTGAAATATTTATCAAATAGGATGACATGTTATCAAGACGATGCCATTTTCAGTCATCTACTGCCAAAAAGACTAATAAGTAAGCAGTACagtcgggaagtattcagaccccttgaccttttccacattttgtaacattacagacgtattctaaaatgtattaaatatatatttttcattatctacacacaattccccataatggcaaagcgaaaaacaggtttttaaaaataaaaaacagaaatggcttatttatataagtattcagaccctttgctatgagacttgaaattgagttcaggtgcatcctgtttccattgatgattctacaacttgattagagtccgcctgtggtaaaatcaattgattggacatgatttggaacggcacacacctgtctatataaggtcccacagtagacagtgcatgtcagagcaaaaaccaagcaatgaggtcgaaggaattatccgtacagctccgagacaggattgtgtcgaggcacagatctggggaagggtaccaacaactttcagcagcattgaaggtccccaagaacacagtggcctccagaggtttggaaccaccaagactcttcctagaactggctgccaggccaaactgagcaatcggaggagaagggccttcgccaaggaggtgaccaagaacccgatggtcactgacagagctccagagttcttctgtggagattggagacccttccagaagaacaactctctgcagcactctaccaatcaggcctttatggtagagtggccagacagaagccactcctcaatgaaaggcacatgacagcccgcttggagtttgccaaagggcacataaaggactctcagaccatgagaaacaagagtctCTGGTCTGGTGTAAAACAAGATAACTCTTTGGCCTggatgccaagcatcatgtctggaagaaacctggcaccatccctacggtgaagcatggtggtggcagcatcatgctgtgaggatgtttttcagcggcagggactgggagactagtcagaattgagggaaagatgaatggagcaaagtatagagatccttgatgaaaatctgctccagagctttcaggacctcagactggggcgaaggttcgaCCTTCtaaaaggacaacgaccctaagcacacagccaaggcaacgcaggagtggcttcgggacaagtctctgaatgtccttgattggcccagccagagcctggacttgaacccgatctaacatctttggagagacctgaaaatagctctgcagcaacgctccccatccaacctgacagagctttcaaggatctgcagtgaagaatgggagaaactccccaaatacaggtgtgccagggttgtagcgtcatacccaacaagactcaaggctgtgatcgctgccaaaggtgctttgacaaagtaatgagtaaagggtatgaatacttatgtaaatgtgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1003870 lncRNA upstream 686 35160310 ~ 35160662 (+) True G882264
TU1003842 lncRNA upstream 40132 35120285 ~ 35121216 (+) True G882236
TU1003843 lncRNA upstream 41376 35119017 ~ 35119972 (+) True G882237
TU1003840 lncRNA upstream 43820 35117304 ~ 35117528 (+) True G882234
TU1003838 lncRNA upstream 44763 35116369 ~ 35116585 (+) True G882232
TU1003874 lncRNA downstream 8481 35171987 ~ 35174824 (+) True G882267
TU1003878 lncRNA downstream 16140 35179646 ~ 35179984 (+) True G882271
TU1003879 lncRNA downstream 16528 35180034 ~ 35180331 (+) True G882272
TU1003903 lncRNA downstream 54459 35217965 ~ 35218391 (+) True G882293
TU1003919 lncRNA downstream 62150 35225656 ~ 35228524 (+) True G882299
XM_021618196.2 mRNA upstream 97884 35050938 ~ 35063464 (+) True LOC110533726
XM_021618190.2 mRNA upstream 186262 34971817 ~ 34975086 (+) True LOC110533722
XM_021618187.2 mRNA upstream 212072 34945726 ~ 34949276 (+) False LOC110533719
XM_036990115.1 mRNA upstream 419897 34722868 ~ 34741451 (+) False LOC110533717
XM_021618211.2 mRNA downstream 34445 35197951 ~ 35203782 (+) True gltpd2
XM_021618214.2 mRNA downstream 144247 35307753 ~ 35319426 (+) False mogat3b
XR_005053626.1 mRNA downstream 194535 35358041 ~ 35362540 (+) True LOC118966749
XM_021619817.2 mRNA downstream 220964 35384470 ~ 35385650 (+) True LOC110534898
XM_021619820.2 mRNA downstream 245630 35409136 ~ 35410259 (+) True LOC110534900
TU1003830 other upstream 51957 35107462 ~ 35109391 (+) True G882225
TU1003805 other upstream 85381 35075598 ~ 35075967 (+) True G882202
TU1003587 other upstream 349819 34808602 ~ 34811529 (+) True G882013
TU1003162 other upstream 527441 34622641 ~ 34633907 (+) False LOC110533716
TU1003072 other upstream 667247 34489820 ~ 34494101 (+) True G881536
TU1003922 other downstream 61591 35225097 ~ 35235225 (+) False G882300
TU1003908 other downstream 152945 35316451 ~ 35319996 (+) False mogat3b
TU1003912 other downstream 154994 35318500 ~ 35321801 (+) False mogat3b
TU1003914 other downstream 154994 35318500 ~ 35321801 (+) True mogat3b
TU1004303 other downstream 251469 35414975 ~ 35416238 (+) True G882624

Expression Profile